PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0124s0194.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 278aa    MW: 31037.2 Da    PI: 10.2699
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0124s0194.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind354.13e-10812771301
            GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd....maflqrdkalaernkalverdnkl 81 
                          mdddg+  rn+gyyepa a++k nlglqlms+i +r++k+    r+ nl ++++++++++++    m++    +++++       +++k+
  Bostr.0124s0194.1.p   1 MDDDGF--RNWGYYEPAaATFKGNLGLQLMSTI-DRNTKPflpgRDPNL-MIGPNGSYHHQEppihMSY----NWINQ-------QKDKF 75 
                          99**99..9*******999**************.9**************.************5555555....*****.......899** PP

            GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrq.rakkpkekkakkkkkk 170
                          +++l+v++s     p++ +vl++t+s+ s+q+    +l++     ++++++e++p++ + + ++++kk+k+++  ++++k+kk +k+k++
  Bostr.0124s0194.1.p  76 FNMLPVTTS-----PNYGNVLPETSSAPSMQM----NLHH----HHHHHQTEENPVKLEDDIVQTNKKRKTNSkAGSTTKAKKPRKPKDE 152
                          *****9997.....99****************....3322....3344566667777777766666666655404567777888888883 PP

            GAGA_bind 171 sekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
                          +    ++++++   +r+k  kks+dlv+ngvs+D+s+lPvP+C+CtGa++qCY+WG+GGWqSaCCtt+iS++PLP+stkrrgaRi+grKm
  Bostr.0124s0194.1.p 153 N----SNNNTNV--SRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKM 236
                          3....3333334..689************************************************************************* PP

            GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          Sqgafkk+LekLa++G++++np+DLk+hWA+HGtnkfvtir
  Bostr.0124s0194.1.p 237 SQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 277
                          ****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.1E-1721277IPR010409GAGA-binding transcriptional activator
PfamPF062174.5E-991277IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATFK GNLGLQLMST IDRNTKPFLP GRDPNLMIGP NGSYHHQEPP  60
IHMSYNWINQ QKDKFFNMLP VTTSPNYGNV LPETSSAPSM QMNLHHHHHH HQTEENPVKL  120
EDDIVQTNKK RKTNSKAGST TKAKKPRKPK DENSNNNTNV SRVKPAKKSV DLVINGVSMD  180
ISGLPVPICT CTGAPQQCYR WGCGGWQSAC CTTNISMHPL PMSTKRRGAR ISGRKMSQGA  240
FKKVLEKLAS DGFNFGNPID LKSHWARHGT NKFVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0124s0194.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3070440.0DQ307044.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) gene, complete cds.
GenBankDQ3070450.0DQ307045.1 Capsella rubella GAGA-binding transcriptional activator (BBR/BPC2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496390.10.0PREDICTED: protein BASIC PENTACYSTEINE2 isoform X1
RefseqXP_010496393.10.0PREDICTED: protein BASIC PENTACYSTEINE2 isoform X2
RefseqXP_010496399.10.0PREDICTED: protein BASIC PENTACYSTEINE2 isoform X1
SwissprotQ9LDE20.0BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLQ2PQR30.0Q2PQR3_9BRAS; GAGA-binding transcriptional activator
STRINGBostr.0124s0194.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.30.0basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]