PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0021.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family BBR-BPC
Protein Properties Length: 286aa    MW: 32007.5 Da    PI: 10.3387
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0021.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind360.34e-11012851301
            GAGA_bind   1 mdddgsrernkgyyepa.aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkalverdn 79 
                          mdddg   rn+gyy++a a++k nlglqlms+i +r++k+    re+nl ++++++++++r+      m++    +++++       +dn
  Bostr.0556s0021.1.p   1 MDDDGL--RNWGYYDQAaATFKGNLGLQLMSTI-DRNTKPflpgRESNL-MIGSNGSYHPREheasmpMNY----SWINQ------SKDN 76 
                          999999..9******9999**************.9**************.************998888888....*****......9*** PP

            GAGA_bind  80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpi.eeaaeeakekkkkkkrqrakkpkekkakkkk 168
                          k++++l++++      p++++vls+t+  +s+q++++p ++ s +e   e+ +  +p   e ++ +k++k++ ++ ++++pk+kk +k+k
  Bostr.0556s0021.1.p  77 KFFNMLPIST------PNYSNVLSETSGSNSMQMMHHPVVNSSRFE---EKPIPPPPReDEIVQPNKKRKMRGSTTTSTTPKAKKLRKPK 157
                          *******766......99*******************988888887...33333333303445556666777777788888888888888 PP

            GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
                          +     +++v+++ +++r k  kks+d+v+ngvs+D+s+lPvPvC+CtG+++qCY+WG+GGWqSaCCtt+iSvyPLP+stkrrgaRi+gr
  Bostr.0556s0021.1.p 158 E-----ERDVTNNVQQQRLKPVKKSVDVVINGVSMDISGLPVPVCTCTGTPQQCYRWGCGGWQSACCTTNISVYPLPMSTKRRGARISGR 242
                          8.....4566666667889*********************************************************************** PP

            GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                          KmSqgafkk+LekLa+eGy+++n++DLk+hWA+HGtnkfvtir
  Bostr.0556s0021.1.p 243 KMSQGAFKKVLEKLATEGYSFGNAIDLKSHWARHGTNKFVTIR 285
                          ******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.0E-1671285IPR010409GAGA-binding transcriptional activator
PfamPF062175.4E-1011285IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDDDGLRNWG YYDQAAATFK GNLGLQLMST IDRNTKPFLP GRESNLMIGS NGSYHPREHE  60
ASMPMNYSWI NQSKDNKFFN MLPISTPNYS NVLSETSGSN SMQMMHHPVV NSSRFEEKPI  120
PPPPREDEIV QPNKKRKMRG STTTSTTPKA KKLRKPKEER DVTNNVQQQR LKPVKKSVDV  180
VINGVSMDIS GLPVPVCTCT GTPQQCYRWG CGGWQSACCT TNISVYPLPM STKRRGARIS  240
GRKMSQGAFK KVLEKLATEG YSFGNAIDLK SHWARHGTNK FVTIR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0021.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2545890.0AC254589.1 Capsella rubella clone CAP16-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020880017.10.0protein BASIC PENTACYSTEINE1
RefseqXP_020880018.10.0protein BASIC PENTACYSTEINE1
SwissprotQ9SKD01e-180BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBLD7LPX40.0D7LPX4_ARALL; Basic pentacysteine 1
STRINGBostr.0556s0021.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.21e-180basic pentacysteine1