PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0031.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 258aa    MW: 28733.9 Da    PI: 7.7043
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-333588255
              G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         prlrWtp+LH++Fv+ave LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Bostr.0556s0031.1.p 35 PRLRWTPDLHRCFVNAVEILGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88
                         8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1393191IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-303188IPR009057Homeodomain-like
SuperFamilySSF466891.0E-143587IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-233588IPR006447Myb domain, plants
PfamPF002499.4E-93687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGRCGGRNGN GSFTGVGFNG NGGGGVRPYV RSPVPRLRWT PDLHRCFVNA VEILGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRRQES EEDHLHDNLS  120
LYTRNDCLLG FHSFPLSSHS SLRGRRKEQQ TSESGYDDDD DFLHILNMKK TTDTTTFQSH  180
HFPKKTQEWR EQEHEEEEDL SLSLSLNHNH WRSNGSSMSE TSEAAVSTCS APFVSKDCFG  240
SSKIDLNLNL SISLLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-183690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295110.0AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBankBT0085560.0BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBankBT0086990.0BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBankKJ1389240.0KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013693582.11e-139putative Myb family transcription factor At1g14600
SwissprotQ700D91e-74MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078JZ201e-138A0A078JZ20_BRANA; BnaCnng70380D protein
TrEMBLA0A3P6D3Z21e-138A0A3P6D3Z2_BRAOL; Uncharacterized protein
STRINGBostr.0556s0031.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-76G2-like family protein