PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0249.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family G2-like
Protein Properties Length: 343aa    MW: 38814.1 Da    PI: 7.9933
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0249.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-31184239156
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                          k+r++W++eLH+rF++a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Bostr.0556s0249.1.p 184 KNRRCWSHELHRRFLNALKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 239
                          68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.733181241IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-28181242IPR009057Homeodomain-like
SuperFamilySSF466891.23E-17182242IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-27184239IPR006447Myb domain, plants
PfamPF002496.1E-7186237IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MKNHNIKRER CCEYIEALEE ERRKINVFQR ELPLCSELVT QAIEAYKREI SGTTTDNLYG  60
QSECSEQTTG ECGRVLDLFI PIRHSSTTVE EFDDKDDDDD EHESHETHID FNDKNTKSDW  120
LKSVQLWNQS DAVVSNRQDC LQDKTETPVE VLKRNDGEEG KNNNIKLPVT SSSGGGGGGR  180
RQRKNRRCWS HELHRRFLNA LKQLGGPHVA TPKQIRELMK VDGLTNDEVK SHLQKYRLHA  240
RRPSQTTPNN RNSQTQHFVV VGGIWVPQTN HSTANAVASV ETTTGIYGPM VSPLPSEWPS  300
HSNFSRRISE DRSRCSNKGI LRCSSPAMSS STRTKTKDAK IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185RRQRKNR
Functional Description ? help Back to Top
Source Description
UniProtProbable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269|PubMed:25723764}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0249.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269|PubMed:25723764, ECO:0000269|PubMed:27419465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0855700.0AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425231.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9LS000.0HHO1_ARATH; Transcription factor HHO1
TrEMBLD7LQU60.0D7LQU6_ARALL; Myb family transcription factor
STRINGBostr.0556s0249.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136001827
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25790.10.0G2-like family protein
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]