PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0264.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 344aa    MW: 37816.3 Da    PI: 4.606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0264.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.96.7e-15128175152
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52 
                          s+  GVr++k +g+W+AeIr+p     + +r +lg+f t e+Aa a+ + +++
  Bostr.0556s0264.1.p 128 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTFETLEQAANAYANKKLE 175
                          7899*****9.**********72....36******************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.17E-18128169No hitNo description
PfamPF008474.5E-9128175IPR001471AP2/ERF domain
SMARTSM003809.4E-15129192IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-14129177IPR016177DNA-binding domain
PROSITE profilePS5103218.07129186IPR001471AP2/ERF domain
PRINTSPR003677.8E-7130141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-19132178IPR001471AP2/ERF domain
PRINTSPR003677.8E-7152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAERKKRSSI QTNKPYKKPM KKKTFQLNHL PGLSEDLKTM RKIRFVVNDP YATDYSSSEE  60
DERVQRRKRY VCEIDLPFAQ AATQAESESS FCQESNNNGV SKTKTSACSK KVLSSKPSRV  120
VGRSSSVSKP VGVRQRKWGK WAAEIRHPIT KTRTWLGTFE TLEQAANAYA NKKLEFDALA  180
AVTSAASSDL SENALSDSNE SGSLISASGS NVEAVSSIDL DKKLLDSTID PEAGESKKAS  240
FDFDFADLQI PEMGCFIDES LIPNACELDF LLTEENNQLL DDYCGIDDLD IIGLECDGPS  300
ELPDYDFSDV EIDLGLIGTT IDKFAFVDHI ATTTTTPLNI ACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0264.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533190.0AK353319.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-P02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006291428.10.0ethylene-responsive transcription factor ERF119
SwissprotQ9LUA20.0EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLR0FQB40.0R0FQB4_9BRAS; Uncharacterized protein
STRINGBostr.0556s0264.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-169ERF family protein