PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0470.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 140aa    MW: 16584.8 Da    PI: 9.9299
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind63.35.8e-201796491
                         HHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind  4 kklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
                         kkly +++++++++++swse+gnsf+v++e+ef ++vLp++   +++a F+R + m gFkk++++e+        we+ ++ F +g+ 
  Bostr.0556s0470.1.p 17 KKLYAMVDEPSTDSIVSWSESGNSFIVWNETEFCRDVLPRFSHYKEMAPFIRRIRMMGFKKIESSEH--------WEYGKDDFLRGHP 96
                         8***************************************9999*******************9984........9999999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-25697IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-2111103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.63E-211397IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000566.1E-101538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-191797IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-105365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-106678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MDRESNRGKE KFHHYRKKLY AMVDEPSTDS IVSWSESGNS FIVWNETEFC RDVLPRFSHY  60
KEMAPFIRRI RMMGFKKIES SEHWEYGKDD FLRGHPDVDL TREQVRARLT EMSSALRKKD  120
TMRARLAEMS SALRKKDTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-16811313125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1617RGKEKFHHYRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018449840.12e-26PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0GQ129e-48R0GQ12_9BRAS; Uncharacterized protein
STRINGBostr.0556s0470.1.p2e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132311127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18870.13e-24HSF family protein