PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0551.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 299aa    MW: 34635.2 Da    PI: 9.7136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0551.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-1568113147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W   Ed +l ++v+ +G+ +W+ Ia+ m+ gRt+k+c++rw++ 
  Bostr.0556s0551.1.p  68 RGHWRISEDSQLMELVAVYGPQNWNHIAENMQ-GRTGKSCRLRWFNQ 113
                          789999**************************.***********996 PP
2Myb_DNA-binding51.22.8e-16121164247
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +++ eE+e+l+ a++ +G++ W+ Ia+ ++ gRt++ +k++w+ +
  Bostr.0556s0551.1.p 121 RAFSDEEEERLLAAHRAFGNK-WAMIAKLFN-GRTDNALKNHWHVL 164
                          689******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.74763114IPR017930Myb domain
SMARTSM007172.4E-1167116IPR001005SANT/Myb domain
PfamPF002496.2E-1568113IPR001005SANT/Myb domain
SuperFamilySSF466897.42E-2768161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-2469121IPR009057Homeodomain-like
CDDcd001671.56E-1071112No hitNo description
PROSITE profilePS5129425.685115169IPR017930Myb domain
SMARTSM007171.8E-13119167IPR001005SANT/Myb domain
PfamPF002491.3E-12121164IPR001005SANT/Myb domain
CDDcd001671.36E-9122165No hitNo description
Gene3DG3DSA:1.10.10.603.5E-20122169IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MKMDFSCFQE YPFGLQCRGT FNGFGENNAV SETVEEFCNK KRMQKKSDDL KKKKKKKKKQ  60
SGSRVCSRGH WRISEDSQLM ELVAVYGPQN WNHIAENMQG RTGKSCRLRW FNQLDPRINK  120
RAFSDEEEER LLAAHRAFGN KWAMIAKLFN GRTDNALKNH WHVLMARKLR QQSSSYVQRF  180
NGSTHKPNTD HKIFNLSPDY VDDEDMDLKK CNWKMLKEGT TNLKAQYLQE EYCSSRMPMQ  240
GPHHHYSAFP VDSLALTLDV SIQEPSSSSS STAEHTMVTR YFETIKRPAF IDFLGVGH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-31681694105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-31681694105C-Myb DNA-Binding Domain
1msf_C7e-31681694105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13958KKRMQKKSDDLKKKKKKKKK
25058KKKKKKKKK
35258KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0551.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2727320.0AF272732.1 Arabidopsis thaliana putative transcription factor (MYB110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877150.10.0transcription factor MYB57
SwissprotQ9SEZ41e-63MY105_ARATH; Transcription factor MYB105
TrEMBLD7LM740.0D7LM74_ARALL; MYB110
STRINGBostr.0556s0551.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29020.21e-176myb domain protein 110
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]