PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0555.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 326aa    MW: 36321.1 Da    PI: 7.196
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0555.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.87e-56231491129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv ++ +++  +i evd++kvePwdLp k+k +ekewyfFs rd+ky+tg r+nratk+gyWkatgkdk
  Bostr.0556s0555.1.p  23 LPPGFRFHPTDEELITHYLRPKVLNSFFSV-LAIGEVDLNKVEPWDLPWKAKIGEKEWYFFSVRDRKYPTGLRTNRATKAGYWKATGKDK 111
                          79*************************999.67***************98999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +++lvg+kktLvfykgrapkg+kt+Wvmheyrle
  Bostr.0556s0555.1.p 112 EIFR-GKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLE 149
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-6020154IPR003441NAC domain
PROSITE profilePS5100554.14723173IPR003441NAC domain
PfamPF023658.5E-3024148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0051091Biological Processpositive regulation of sequence-specific DNA binding transcription factor activity
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNYEVSSLGE ISEGVEDSEQ IDLPPGFRFH PTDEELITHY LRPKVLNSFF SVLAIGEVDL  60
NKVEPWDLPW KAKIGEKEWY FFSVRDRKYP TGLRTNRATK AGYWKATGKD KEIFRGKSLV  120
GMKKTLVFYK GRAPKGVKTN WVMHEYRLEG EYAIDNLPKT AKKRADGTKV HISGLMMFGS  180
GVNKFEPVAL PPLMDSSPSL KSRGRDSLAG TAVGCLFSHV TCFSDQTYED KSLVAESKDY  240
LNSTMFGSTS TNVIPNIGYL LDSDPLSLQD NSSILKMLLD SEETKFKKNL QNSGSSESEL  300
TASSWHGHNP SGSTGLVNLD CVWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-51141485142NO APICAL MERISTEM PROTEIN
1ut4_B1e-51141485142NO APICAL MERISTEM PROTEIN
1ut7_A1e-51141485142NO APICAL MERISTEM PROTEIN
1ut7_B1e-51141485142NO APICAL MERISTEM PROTEIN
3swm_A1e-51141488145NAC domain-containing protein 19
3swm_B1e-51141488145NAC domain-containing protein 19
3swm_C1e-51141488145NAC domain-containing protein 19
3swm_D1e-51141488145NAC domain-containing protein 19
3swp_A1e-51141488145NAC domain-containing protein 19
3swp_B1e-51141488145NAC domain-containing protein 19
3swp_C1e-51141488145NAC domain-containing protein 19
3swp_D1e-51141488145NAC domain-containing protein 19
4dul_A1e-51141485142NAC domain-containing protein 19
4dul_B1e-51141485142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0555.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425698.10.0PREDICTED: NAC domain-containing protein 59-like
SwissprotQ9LJW30.0NAC59_ARATH; NAC domain-containing protein 59
TrEMBLD7LM770.0D7LM77_ARALL; ANAC059/ATNAC3
STRINGBostr.0556s0555.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40028174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-175NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]