PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0588.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 412aa    MW: 46168.3 Da    PI: 9.1189
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0588.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-05628123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C +Cgk F +    + H+r H
  Bostr.0556s0588.1.p  6 HVCRICGKKFATLKGVHGHQRIH 28
                         79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.9E-6430IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.83E-6428No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697633IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-6177200No hitNo description
SMARTSM0035538182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSQRLHVCRI CGKKFATLKG VHGHQRIHSG KSNRIEDDNR LQRIWGLKKS RVCSVSASSA  60
KETETCDLLR IGSSFMTEIE KHEVREAAMN LVMLSQRVYD FASIRNLLPG DDSIDLDQLK  120
PMQGKKLHCV ESKLDEFSEM VSHSGFERSG NWSEIRFSDA VVARGLPCPL RSKLEKKTHS  180
SYKCDICDKR CSQALGSHQS LHRSIKGKLV RKNEYIEGDR SLSHSLEAKK VVTQPSSFEV  240
SQEEKILQCV EPKLDFQKLL AHSGSNKSNT CSKTRFSAFP SPPEVKKIVS QPSTVEFTVD  300
EKILHCAESK LDDCHELLAY SGFNKSSSCS KTRFSALHSP LRSKWRSSYR FKICGKIFEC  360
SQALDGQQSL HRSTNGHKRD YTEDGNSPSG ETDSEASKIV SQPSSFKSQG I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0588.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013099e-41AP001309.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MUO10.
GenBankCP0026869e-41CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085439.11e-137PREDICTED: LOW QUALITY PROTEIN: putative uncharacterized zinc finger protein 814
TrEMBLD7LNX61e-142D7LNX6_ARALL; Uncharacterized protein
STRINGBostr.0556s0588.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-129C2H2 family protein