PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0556s0752.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

LBD

Protein Properties

Length: 100aa MW: 11066.6 Da PI: 9.0787

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0556s0752.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.6	1.5e-31	9	95	1	86
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+ rr+C+++C++apyf e+ +++fa+vh++FGasnv+k+l ++pe+er+da+ s++ eA+ar+r+P+y++v++ +k++ Bostr.0556s0752.1.p 9 PCRACKFFRRRCVAGCIFAPYFDYEKgAAHFAVVHRVFGASNVSKYLPNVPEHERQDAVVSICSEAQARLRNPIYSCVSFQQKVNYS 95 7*********************9989*************************************************99998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.553	8	99	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-30	9	95	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MSSSVGGGPC RACKFFRRRC VAGCIFAPYF DYEKGAAHFA VVHRVFGASN VSKYLPNVPE 60 HERQDAVVSI CSEAQARLRN PIYSCVSFQQ KVNYSFHNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-29	2	99	4	100	LOB family transfactor Ramosa2.1
5ly0_B	5e-29	2	99	4	100	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269\|PubMed:19088331}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0556s0752.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010456310.1	2e-40	PREDICTED: LOB domain-containing protein 30-like
Swissprot	O81323	4e-40	LBD30_ARATH; LOB domain-containing protein 30
TrEMBL	V4L207	1e-38	V4L207_EUTSA; Uncharacterized protein
STRING	Bostr.0556s0752.1.p	4e-67	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00220.1	2e-42	LBD family protein

Link Out ? help Back to Top
Phytozome	Bostr.0556s0752.1.p

Publications ? help Back to Top
Rast-Somssich MI, et al. The Arabidopsis JAGGED LATERAL ORGANS (JLO) gene sensitizes plants to auxin. J. Exp. Bot., 2017. 68(11): p. 2741-2755 [PMID:28472464] Liu C,Yu H,Li L SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana. PLoS Genet., 2019. 15(1): p. e1007928 [PMID:30657769]