PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0556s0784.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 121aa    MW: 13486 Da    PI: 6.2344
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0556s0784.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM416.1e-132270148
                  NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp 48
                         lppG++F Pt++el+++yLk+ ++g+k++  +v i++v+iy+++P+++ 
  Bostr.0556s0784.1.p 22 LPPGYKFAPTEQELISCYLKPYLDGNKNSSLNVpIHHVNIYESNPEQFS 70
                         79*************************9998999************986 PP
2NAM31.64.9e-107611191127
                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          ++ + ++ +vg k+ L++y g++p+g+kt+W+m+ey 
  Bostr.0556s0784.1.p  76 KINA-GEGVVGYKTALAYYIGKQPSGVKTNWLMQEYW 111
                          5655.7889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-2611118IPR003441NAC domain
PROSITE profilePS5100513.49322121IPR003441NAC domain
PfamPF023652.6E-1123110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
IPFSSSSAAD NLSSPSTKPY LLPPGYKFAP TEQELISCYL KPYLDGNKNS SLNVPIHHVN  60
IYESNPEQFS GFCAQKINAG EGVVGYKTAL AYYIGKQPSG VKTNWLMQEY WFHQSSDDNE  120
K
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0556s0784.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191215.19e-41NAC domain containing protein 65
RefseqXP_002878093.16e-40NAC transcription factor 29
TrEMBLD7LVH11e-38D7LVH1_ARALL; Uncharacterized protein
TrEMBLQ9LXY42e-39Q9LXY4_ARATH; NAC domain containing protein 65
STRINGBostr.0556s0784.1.p4e-85(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56560.12e-38NAC domain containing protein 65