PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0039.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

C3H

Protein Properties

Length: 452aa MW: 49565.5 Da PI: 8.9299

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0039.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.5e-06	406	428	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ff r C+ G++C + H+ Bostr.0568s0039.1.p 406 KPCMFFNRAKGCRLGESCLYLHD 428 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.882	403	430	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-5	405	431	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-4	406	428	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-4	406	430	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MKKTKKKSGV SWASDSMLCQ VKMFLTEDCP AKVASSNILP TGFEATEHAS RLNISHIPRI 60 KWKLPPMLVI NDALLVGSGG ESTETRSENL RIAKVLEAFY PHRSVIPTRP SVSPTIEESH 120 YDDSNTPNIP LTPIEDEPEP AVESPHDFKA PAAVSVLGPD LSLAASAALS ALTKEQGCQV 180 DADLLVKLLS DPKIVENFLN DMKGKPFEIA NDDSLNTDIT KPRHATSTAI DRNTPPIPGN 240 RVPVSAQSSA TDPPLPKPSQ PMSSALSMNL NLQKPTLVVH TYPLSSGIKP LPRVEDSYSY 300 TAAPLKPSPV DNVVVSEQKT QSLNMSTFST WNMNKVPESA QTETDPQIRN GNINRDDPVS 360 AKPVKNLDYF KNLIREHGGV NPATNENNNY KGRADDMKVV KVKIQKPCMF FNRAKGCRLG 420 ESCLYLHDRS KRLWTDVAPR FPRAKRLKFG S*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MKKTKKKSGV SWASDSMLCQ VKMFLTEDCP AKVASSNILP TGFEATEHAS RLNISHIPRI  60
KWKLPPMLVI NDALLVGSGG ESTETRSENL RIAKVLEAFY PHRSVIPTRP SVSPTIEESH  120
YDDSNTPNIP LTPIEDEPEP AVESPHDFKA PAAVSVLGPD LSLAASAALS ALTKEQGCQV  180
DADLLVKLLS DPKIVENFLN DMKGKPFEIA NDDSLNTDIT KPRHATSTAI DRNTPPIPGN  240
RVPVSAQSSA TDPPLPKPSQ PMSSALSMNL NLQKPTLVVH TYPLSSGIKP LPRVEDSYSY  300
TAAPLKPSPV DNVVVSEQKT QSLNMSTFST WNMNKVPESA QTETDPQIRN GNINRDDPVS  360
AKPVKNLDYF KNLIREHGGV NPATNENNNY KGRADDMKVV KVKIQKPCMF FNRAKGCRLG  420
ESCLYLHDRS KRLWTDVAPR FPRAKRLKFG S*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0039.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020887391.1	0.0	zinc finger CCCH domain-containing protein 68
Swissprot	Q9FH61	0.0	C3H68_ARATH; Zinc finger CCCH domain-containing protein 68
TrEMBL	D7MMZ4	0.0	D7MMZ4_ARALL; Zinc finger (CCCH-type) family protein
STRING	Bostr.0568s0039.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8704	11	12

Link Out ? help Back to Top
Phytozome	Bostr.0568s0039.1.p