PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0124.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 177aa    MW: 19198.5 Da    PI: 8.9373
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0124.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-19107158156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                          ++ykGVr+++ +g+W+AeI+ p     +  +r +lg+f tae+Aa+a+++a+ +l ge
  Bostr.0568s0124.1.p 107 KKYKGVRQKP-SGKWAAEIWNP-----SmkARRWLGTFPTAEMAARAYDEAAAELVGE 158
                          59******99.7*********8.....335************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.37E-19107143No hitNo description
Gene3DG3DSA:3.30.730.109.0E-24108159IPR001471AP2/ERF domain
SMARTSM003801.0E-27108172IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-17108159IPR016177DNA-binding domain
PROSITE profilePS5103220.323108169IPR001471AP2/ERF domain
PfamPF008472.6E-13108158IPR001471AP2/ERF domain
PRINTSPR003674.8E-8109120IPR001471AP2/ERF domain
PRINTSPR003674.8E-8131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MNPSKFDPSN TDNSENVLSN DQNENVPAVA SPPPPSSSYL TRDQEHEIMV SALRQVISNS  60
GGHTSSSNLI AAETLPPPDA GPCPLCGITG CYGCVFPRPH GEMKKEKKYK GVRQKPSGKW  120
AAEIWNPSMK ARRWLGTFPT AEMAARAYDE AAAELVGETS VRRGTTSGER IKRRQR*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00594DAPTransfer from AT5G67000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0124.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006281738.17e-96ethylene-responsive transcription factor ERF122
SwissprotQ38Q401e-82EF122_ARATH; Ethylene-responsive transcription factor ERF122
TrEMBLR0F0662e-94R0F066_9BRAS; Uncharacterized protein
STRINGBostr.0568s0124.1.p1e-129(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34721562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67000.15e-70ERF family protein