PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0133.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 200aa    MW: 22212.2 Da    PI: 7.6709
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0133.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-1687132555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR++iN+++  L+el+P++      K +Ka++L +A+eY+k+Lq
  Bostr.0568s0133.1.p  87 HNLSEKRRRSKINEKMKALQELIPNS-----NKTDKASMLDEAIEYLKQLQ 132
                          9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.0682131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1986153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.90E-1687136No hitNo description
Gene3DG3DSA:4.10.280.101.5E-1987139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-1487132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1888137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010047Biological Processfruit dehiscence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGDSDVGDRL AHPSSSDELS SFLRQILSRT PITQPSSPPK RIVSSAETSY VGYGVAETGQ  60
DKYAFENKRD GGRQKNSLKR NIDAHFHNLS EKRRRSKINE KMKALQELIP NSNKTDKASM  120
LDEAIEYLKQ LQLQVQVLAV MNGLALNPMR LPPVLPPTQT RIIETLEQDL NLETLLAAPH  180
SLEQPQASQE MCFSTATLL*
Functional Description ? help Back to Top
Source Description
UniProtRequired for the dehiscence of fruit, especially for the separation of the valve cells from the replum. Promotes the differentiation of a strip of labile nonlignified cells sandwiched between layers of lignified cells. {ECO:0000269|PubMed:11747817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0133.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0846320.0AY084632.1 Arabidopsis thaliana clone 11375 mRNA, complete sequence.
GenBankBT0289460.0BT028946.1 Arabidopsis thaliana At5g67110 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444695.11e-124PREDICTED: transcription factor ALC-like
SwissprotQ9FHA21e-117ALC_ARATH; Transcription factor ALC
TrEMBLR0GEL91e-119R0GEL9_9BRAS; Uncharacterized protein
STRINGBostr.0568s0133.1.p1e-145(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139821724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67110.11e-110bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  4. Zumajo-Cardona C,Ambrose BA,Pabón-Mora N
    Evolution of the SPATULA/ALCATRAZ gene lineage and expression analyses in the basal eudicot, Bocconia frutescens L. (Papaveraceae).
    Evodevo, 2017. 8: p. 5
    [PMID:28331573]
  5. He H, et al.
    CELLULASE6 and MANNANASE7 Affect Cell Differentiation and Silique Dehiscence.
    Plant Physiol., 2018. 176(3): p. 2186-2201
    [PMID:29348141]