PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0140.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 359aa    MW: 40686.1 Da    PI: 8.7081
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0140.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.9e-17103151154
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++
  Bostr.0568s0140.1.p 103 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFR 151
                          78*******************......55**********************9987 PP
2AP243.95.9e-14195245155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  Bostr.0568s0140.1.p 195 SKYRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 245
                          89********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-15103161IPR016177DNA-binding domain
PfamPF008477.1E-9103151IPR001471AP2/ERF domain
SMARTSM003803.3E-29104166IPR001471AP2/ERF domain
PROSITE profilePS5103217.451104160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-16104160IPR001471AP2/ERF domain
CDDcd000185.18E-24195253No hitNo description
PfamPF008474.1E-9195245IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-17195254IPR016177DNA-binding domain
PROSITE profilePS5103215.488196253IPR001471AP2/ERF domain
SMARTSM003805.7E-31196259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-17196253IPR001471AP2/ERF domain
PRINTSPR003675.2E-6197208IPR001471AP2/ERF domain
PRINTSPR003675.2E-6235255IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MWNLNDSPDH HEESDSRWNR VGHVSSYMSQ STTWLSSVPP VTRNFFPSQI MEPGVREIYG  60
SGFNRSQSVG KSDPSGSGRP EELAPEISRP LKKSRRGPRS RSSQYRGVTF YRRTGRWESH  120
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RSVDADINFD IEDYVDDLKQ MGNLTKEEFM  180
HVLRRQGTGF PRGSSKYRGV TLHKCGRWES RLGQFLNKKY VYLGLFDTEI EAARAYDKAA  240
IKCNGKDAVT NFDPKVYEEE LSPEKKWNDH NLDLSLGESN SEEFGFKSEI ASITNRIRDE  300
ERLLGSDLSL AMTTTAVRSE KQSDGGGKQV GMAASSGYSP HPSPWHHHTP NTFHFFRH*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0140.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444685.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ9FH950.0TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLR0EWM50.0R0EWM5_9BRAS; Uncharacterized protein
STRINGBostr.0568s0140.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.10.0target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]