PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0171.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 243aa    MW: 26394 Da    PI: 8.1562
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0171.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-0593115123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ CgksFs+   L  H  +H
  Bostr.0568s0171.1.p  93 YKCTVCGKSFSSYQALGGHKTSH 115
                          9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-992115No hitNo description
PROSITE profilePS5015711.21993120IPR007087Zinc finger, C2H2
PfamPF139129.0E-1493117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-593115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002893115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
SuperFamilySSF576672.54E-9159186No hitNo description
PfamPF139128.5E-12164188IPR007087Zinc finger, C2H2
SMARTSM003550.48164186IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933164186IPR007087Zinc finger, C2H2
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MALETLNSPT ATTTTRPLLR YREEMEPENL EQWAKRKRTK RQRFDHQHQN QETNTKLPSE  60
EEYLALCLLM LARGSAVQSP PPSRPSPPDH RDYKCTVCGK SFSSYQALGG HKTSHRKPTN  120
NNSTITSGNQ ELSNNSHSNS NGGSVVINVT VNTSNGVGQS GRIHTCSICF KSFPSGQALG  180
GHKRCHYDGG NNGNGSSSNS VEVVPGSDVS DVDNERSSEE SAIVHRGFDL NLPADQVSVK  240
IS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00118ampDAPTransfer from AT5G67450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0171.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076450.0AB007645.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8K14.
GenBankAY1233280.0AY123328.1 Arabidopsis thaliana zinc finger protein OZAKGYO (OZAKGYO) gene, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006279684.11e-136zinc finger protein AZF1
SwissprotQ9SSW11e-131AZF1_ARATH; Zinc finger protein AZF1
TrEMBLR0EU431e-134R0EU43_9BRAS; Uncharacterized protein
STRINGBostr.0568s0171.1.p1e-180(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.11e-99zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]