PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0256.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 296aa MW: 33723.2 Da PI: 9.9604

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0256.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.3e-14	103	154	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++++P + +s+ ++ a+i e +++Y+k+L+ Bostr.0568s0256.1.p 103 QRMNHIAVERNRRRQMNHFLSVLKSMMPLS---YSQHNDQASIIEGTINYLKKLE 154 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.53E-13	100	158	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.2E-13	101	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.58E-17	101	174	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.421	102	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.2E-11	103	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.4E-9	108	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	8.49E-4	222	279	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MMFQQEYYPY GFSLLETSLS YEILDFFQTI VVSNSEDLAS QQNSLSSSSY SATLSCSITE 60 QQSHSTQKLS SLRPRGGSSD DVPSRKRTRR TRSDRKIEDK EKQRMNHIAV ERNRRRQMNH 120 FLSVLKSMMP LSYSQHNDQA SIIEGTINYL KKLEQLLHSL EAQLKATKPK QSPNIFSNFF 180 MFPQYSTAIA AASSSSSSHH HHKRLTAVAD VEVTMVERHA NIKVLTKTRP KLLFRIINEF 240 YSLGLSTIHL NLTTSKDMSL FTFNVKVEAD CQLTPSTIEV ANAVHEVVRR IHKES*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	114	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0256.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070095	0.0	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	0.0	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006281758.1	1e-152	transcription factor bHLH99
Refseq	XP_010463194.2	1e-152	PREDICTED: transcription factor bHLH99-like
Swissprot	Q9FKQ6	1e-139	BH099_ARATH; Transcription factor bHLH99
TrEMBL	R0F081	1e-150	R0F081_9BRAS; Uncharacterized protein
STRING	Bostr.0568s0256.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-133	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.0568s0256.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]