PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0279.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 282aa    MW: 31825.1 Da    PI: 9.0663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0279.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19110159255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           y+GVr++  +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ k++g
  Bostr.0568s0279.1.p 110 LYRGVRQRQ-WGKWVAEIRLPKN---RTRLWLGTFETAEQAALAYDQAAHKIRG 159
                          59****999.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.34E-32109168No hitNo description
Gene3DG3DSA:3.30.730.104.4E-32110168IPR001471AP2/ERF domain
PROSITE profilePS5103223.235110167IPR001471AP2/ERF domain
SMARTSM003802.8E-37110173IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22110167IPR016177DNA-binding domain
PRINTSPR003674.6E-11111122IPR001471AP2/ERF domain
PfamPF008473.0E-13111159IPR001471AP2/ERF domain
PRINTSPR003674.6E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MAIALNVNGY IDEFTKALEP FMKVSSSSSS ASSKPKTLTP NFSPNNNQVL PVSNQPGPIG  60
LNQLTPTQIL QIQTELHLRH NQSRRRSGHL LTAKPTPMKK TDVVTKPFKL YRGVRQRQWG  120
KWVAEIRLPK NRTRLWLGTF ETAEQAALAY DQAAHKIRGD DARLNFPNIT RQGDYKQTLS  180
PSINAKIESI CNSSDFPLPQ LKKQTKTEEV FYGFHCTSPK PEQEPEFEDK FGSGFSGSFP  240
ESDITLLNFS SDCMKEDESF LMGLHKYPSL EIDWDAIEKL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-22109167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0279.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133950.0AB013395.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQN23.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010484316.11e-178PREDICTED: ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-165ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A178UIA01e-164A0A178UIA0_ARATH; Integrase-type DNA-binding superfamily protein
TrEMBLA0A384KZF91e-164A0A384KZF9_ARATH; Uncharacterized protein
STRINGBostr.0568s0279.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-135ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]