PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0568s0285.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 106aa MW: 11364.1 Da PI: 11.1174

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0568s0285.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.4	2.5e-20	9	56	1	48
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krie ks rqvtfskRrng++ KA LS+LC+ +av+++s +gkly Bostr.0568s0285.1.p 9 KRIEKKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYN 56 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	27.109	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.1E-29	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.23E-23	1	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-22	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.0E-20	10	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-22	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-22	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 106 aa Download sequence Send to blast
MGRRKVEIKR IEKKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYNSSSG 60 DKEKGGSQLN SWGAKKTSLE TGGERGMSPV NSSGNKVPET LPLLK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-16	1	64	1	64	MEF2 CHIMERA
6byy_B	1e-16	1	64	1	64	MEF2 CHIMERA
6byy_C	1e-16	1	64	1	64	MEF2 CHIMERA
6byy_D	1e-16	1	64	1	64	MEF2 CHIMERA
6bz1_A	1e-16	1	64	1	64	MEF2 CHIMERA
6bz1_B	1e-16	1	64	1	64	MEF2 CHIMERA
6bz1_C	1e-16	1	64	1	64	MEF2 CHIMERA
6bz1_D	1e-16	1	64	1	64	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that prevents vernalization by short periods of cold. Acts as a floral repressor. {ECO:0000269\|PubMed:12724541, ECO:0000269\|PubMed:19139056, ECO:0000269\|PubMed:20551443}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0568s0285.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269\|PubMed:15520273, ECO:0000269\|PubMed:15659097}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU980629	2e-60	EU980629.1 Arabidopsis thaliana ecotype Gr-3 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds.
GenBank	EU980630	2e-60	EU980630.1 Arabidopsis thaliana ecotype Bs-1 MAF2 gene, complete sequence; and MAF3 (MAF3), MAF4 (MAF4), and MAF5 (MAF5) genes, complete cds.
GenBank	HM487066	2e-60	HM487066.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487067	2e-60	HM487067.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487068	2e-60	HM487068.1 Arabidopsis thaliana ecotype KZ-10 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487069	2e-60	HM487069.1 Arabidopsis thaliana ecotype Gr-3 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487070	2e-60	HM487070.1 Arabidopsis thaliana ecotype Sg-1 MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487071	2e-60	HM487071.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 (MAF2) gene, complete sequence, alternatively spliced.
GenBank	HM487085	2e-60	HM487085.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487086	2e-60	HM487086.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487087	2e-60	HM487087.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 3 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487088	2e-60	HM487088.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487089	2e-60	HM487089.1 Arabidopsis thaliana ecotype Tu-1 MADS affecting flowering 2 variant 5 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487090	2e-60	HM487090.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487091	2e-60	HM487091.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487093	2e-60	HM487093.1 Arabidopsis thaliana ecotype UWO MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487099	2e-60	HM487099.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 1 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487100	2e-60	HM487100.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 2 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487101	2e-60	HM487101.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 3 (MAF2) mRNA, complete cds, alternatively spliced.
GenBank	HM487102	2e-60	HM487102.1 Arabidopsis thaliana ecotype Sha MADS affecting flowering 2 variant 4 (MAF2) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462383.1	6e-35	PREDICTED: agamous-like MADS-box protein AGL27 isoform X6
Refseq	XP_019094207.1	6e-35	PREDICTED: agamous-like MADS-box protein AGL31 isoform X5
Refseq	XP_019094208.1	6e-35	PREDICTED: agamous-like MADS-box protein AGL27 isoform X7
Refseq	XP_019094210.1	6e-35	PREDICTED: agamous-like MADS-box protein AGL27 isoform X8
Swissprot	Q9FPN7	3e-32	AGL31_ARATH; Agamous-like MADS-box protein AGL31
TrEMBL	V4MJ09	6e-33	V4MJ09_EUTSA; Uncharacterized protein
STRING	Bostr.0568s0285.1.p	1e-67	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM78	28	413

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65050.2	2e-26	AGAMOUS-like 31

Link Out ? help Back to Top
Phytozome	Bostr.0568s0285.1.p

Publications ? help Back to Top
Suter L,Rüegg M,Zemp N,Hennig L,Widmer A Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis. Plant Physiol., 2014. 166(4): p. 1928-42 [PMID:25339407]