PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.0568s0546.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 282aa    MW: 30659.9 Da    PI: 5.7454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.0568s0546.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.8e-11164210555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Bostr.0568s0546.1.p 164 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 210
                          999***********************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.24E-10157214No hitNo description
SuperFamilySSF474596.41E-17157224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-17160224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSV  60
AEESTVTDLT TGWGGRKTRD LNSEDDSSKM VSSSSSGNEL KESGDKKRKV CGSESGNGDC  120
SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT  180
ALQDIIPGCN KIIGKALVLD EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD  240
LETLPIDVHR TIYEQQEANE TRGSQPEWLH MQVDGNFNRT T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199108LKESGDKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.0568s0546.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721040.0AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
GenBankAY0845780.0AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence.
GenBankAY1230230.0AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010444110.10.0PREDICTED: transcription factor bHLH79
SwissprotQ9LV170.0BH079_ARATH; Transcription factor bHLH79
TrEMBLA0A178UAT60.0A0A178UAT6_ARATH; Uncharacterized protein
STRINGBostr.0568s0546.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18552878
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]