PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.0597s0065.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 261aa MW: 29467.9 Da PI: 4.4596

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.0597s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.6	7.5e-09	11	49	1	39
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39 k+i+ k r fs+Rr+g+ KA+EL+ L +a+ a++ Bostr.0597s0065.1.p 11 KKIQKKESRAGFFSRRRTGLYSKASELCLLSGAQMAILT 49 578889999999***********************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.101	3	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.9E-8	3	63	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-13	4	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-5	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-10	12	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-5	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGGKKRKIPI KKIQKKESRA GFFSRRRTGL YSKASELCLL SGAQMAILTT PCSSNSDVSF 60 YSFGHSSVDG VVAAFLDDQR PVREKNLGLG FWWEDEDLAK SENSEELRSA IESMSKMLRK 120 LKDSVNNYQR DHQDDVKNND IKKNDLVSHE TRKLDQPLNL QFISAICDNL PTNFNKIAQE 180 QDQIMAAGNL DDGYINQELD LDQLIDFESL LDGDYETTQE HPETAETSLL MNSEMEDVSM 240 VLKDGTLVLQ RGLDEDDLFQ *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.0597s0065.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006284913.2	1e-124	agamous-like MADS-box protein AGL97
Swissprot	Q9C633	1e-52	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0F865	1e-106	R0F865_9BRAS; Uncharacterized protein (Fragment)
STRING	Bostr.0597s0065.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G38620.1	2e-49	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Bostr.0597s0065.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]