PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10040s0194.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 185aa    MW: 22066.5 Da    PI: 9.7313
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10040s0194.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.71.3e-11911610118
                   NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                           +++e+v +yLk  +++ +    +++++ d+y  +Pw+L   +k    ++  yfF++r  ++    ++    +sg W+  g+dk ++s+ 
  Bostr.10040s0194.1.p   9 SEDEIVAQYLKMMIDNGNDWPRHFLRSQDVYCKNPWTLFdtQKPVILHDGRYFFVNRIVNSG---KTDG-CESGCWRIMGRDKLIKSEk 93 
                           579************999666578**************5222333356688****9987643...3444.589*************986 PP

                   NAM  96 kgelvglkktLvfykgrapkgek 118
                           +g+  g kk+  f + ++p+++ 
  Bostr.10040s0194.1.p  94 TGNILGFKKVYKFCEMEKPNSVF 116
                           77889*********877776554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.0761162IPR003441NAC domain
PfamPF023659.4E-89135IPR003441NAC domain
SuperFamilySSF1019412.75E-219159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDLKCHQLSE DEIVAQYLKM MIDNGNDWPR HFLRSQDVYC KNPWTLFDTQ KPVILHDGRY  60
FFVNRIVNSG KTDGCESGCW RIMGRDKLIK SEKTGNILGF KKVYKFCEME KPNSVFKFWE  120
KEKRRVRDKR IWVMEDCFNL QNAKRHVEDH QNMKSLKEIH LKSNENGFTN KKMVSDKVYV  180
TIFK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10040s0194.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6017512e-37HE601751.1 Arabidopsis halleri subsp. halleri BAC clone 9G1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473211.17e-75PREDICTED: uncharacterized protein LOC104752708
TrEMBLR0I8R22e-67R0I8R2_9BRAS; Uncharacterized protein
STRINGBostr.10040s0194.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161941114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60240.14e-71NAC family protein