PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10040s0202.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 291aa    MW: 34051.3 Da    PI: 9.4264
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10040s0202.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.84e-141110033128
                   NAM  33 vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektd 120
                           ++k+vd+++ +P+dL    ++ ++   f + + ++++ g  k+ + +sg W+  g+dk ++sk +g++ g kk+L f ++r+p+  k +
  Bostr.10040s0202.1.p  11 HFKDVDLFNKNPSDLF---YS-QTP-NFVVVKPRTKTCG--KTDVCESGCWRIMGRDKLIKSKeTGKVLGFKKILKFCEKRKPREYKRS 92 
                           6899***********5...22.233.4555555544444..3446789*************99788899******************** PP

                   NAM 121 Wvmheyrl 128
                           Wvm+eyrl
  Bostr.10040s0202.1.p  93 WVMEEYRL 100
                           ******98 PP
2NAM255.2e-0817827134128
                   NAM  34 ikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy...kgrapkge 117
                             +  +y+++P  L   +++  ++  +  F+++         ++ + + g Wk   + + + +++ge+vg kk+L fy   + r+ k +
  Bostr.10040s0202.1.p 178 YVTNTVYRLNPLMLVDPLDQtfRQYGTCIFTNETF------GTTYKCDGGSWKILHRGRLLDRETGETVGFKKVLKFYetvNVRKAKDV 260
                           44556777777777422222012223344444322......12234578******999999999**************66557999999 PP

                   NAM 118 ktdWvmheyrl 128
                           k +W++ eyrl
  Bostr.10040s0202.1.p 261 KETWTIVEYRL 271
                           *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.4231118IPR003441NAC domain
SuperFamilySSF1019415.75E-252116IPR003441NAC domain
PfamPF023652.1E-633100IPR003441NAC domain
SuperFamilySSF1019412.88E-20133285IPR003441NAC domain
PROSITE profilePS5100515.419145287IPR003441NAC domain
PfamPF023651.3E-4194271IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MIVHGDSWPE HFKDVDLFNK NPSDLFYSQT PNFVVVKPRT KTCGKTDVCE SGCWRIMGRD  60
KLIKSKETGK VLGFKKILKF CEKRKPREYK RSWVMEEYRL TNNLNWKQDH VICKIRLLFE  120
TEIGFLLTKR FKTTSESLLE NEPLPSRGFH SLDPREEDLF YLVTIRMTSG EGNGWSSYVT  180
NTVYRLNPLM LVDPLDQTFR QYGTCIFTNE TFGTTYKCDG GSWKILHRGR LLDRETGETV  240
GFKKVLKFYE TVNVRKAKDV KETWTIVEYR LAEEVMQNKV LCVIKKFPSD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10040s0202.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_176235.11e-132NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
TrEMBLO807521e-130O80752_ARATH; Apical meristem formation protein-related
STRINGBostr.10040s0202.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-135NAC family protein