PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10058s0014.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 228aa MW: 26229.9 Da PI: 10.1521

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10058s0014.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	77.8	8.1e-25	5	54	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s +++++s+R+++++KKAeELS+LCd+ev vi+++++g+l+++++ Bostr.10058s0014.1.p 5 PSSSYSLASTSLSNRLKTVFKKAEELSILCDIEVGVIYYGPDGELKTWPK 54 689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	8.4E-4	6	55	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.4E-14	13	52	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	11.241	14	56	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.09E-15	14	88	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MRSSPSSSYS LASTSLSNRL KTVFKKAEEL SILCDIEVGV IYYGPDGELK TWPKEKEKVK 60 DMALRYSQLT EALRRKKSVN LYGFLNKKKI KDLKNLNKER KTMLKKVNGL KYPISDHYSS 120 DQVSQLIQSL ELNFSKFQER LRFVESQKHK ETKLDHQSLA SSSLNHQQHQ HLQTQSLNPS 180 QFSLIMYNHG DNTFSQIPLS ASNFNQDFSA LLQESELKNH LMKQNLS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10058s0014.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002870726.2	1e-113	agamous-like MADS-box protein AGL75
Swissprot	Q9FIX0	1e-104	AGL81_ARATH; Agamous-like MADS-box protein AGL81
TrEMBL	D7MJC3	1e-113	D7MJC3_ARALL; Uncharacterized protein (Fragment)
STRING	Bostr.10058s0014.1.p	1e-164	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	2e-87	AGAMOUS-like 75

Link Out ? help Back to Top
Phytozome	Bostr.10058s0014.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]