PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10058s0030.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

MYB

Protein Properties

Length: 212aa MW: 24217.2 Da PI: 9.6421

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10058s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4.2e-14	7	51	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT Ed++l+++v+ +G++ Wk I ++m+ +R + +c++rw++ Bostr.10058s0030.1.p 7 EHWTHSEDLKLKELVAVYGPRKWKFIGEKMQ-TRKGTSCRLRWFNQ 51 67***************************.*********996 PP
2	Myb_DNA-binding	54.5	2.8e-17	61	102	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T eE+e+l+ a+k++G++ W++Ia+ ++ gRt++ +k++w + Bostr.10058s0030.1.p 61 FTDEEEEKLLTAHKLFGNK-WSKIAKLLN-GRTDNAVKNHWKLL 102 9****************.*****.*********876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.186	1	52	IPR017930	Myb domain
SMART	SM00717	1.7E-11	5	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.84E-26	6	99	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-13	7	51	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-22	8	59	IPR009057	Homeodomain-like
CDD	cd00167	3.20E-10	9	50	No hit	No description
PROSITE profile	PS51294	23.88	53	107	IPR017930	Myb domain
SMART	SM00717	2.7E-15	57	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.7E-21	60	105	IPR009057	Homeodomain-like
Pfam	PF00249	5.6E-15	61	100	IPR001005	SANT/Myb domain
CDD	cd00167	9.27E-12	61	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MVYSSKEHWT HSEDLKLKEL VAVYGPRKWK FIGEKMQTRK GTSCRLRWFN QLDPRINQRD 60 FTDEEEEKLL TAHKLFGNKW SKIAKLLNGR TDNAVKNHWK LLMNRIIKRQ STFNIRFFAN 120 IMNRHTSNLA PGSVSDEGTE IKSYSCNMPY EETTNLSAQD SQEENDSSSM PVQHSASSSS 180 SSPSSLASSE AEKTMTRKTP RFIDFLGIGD S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	7e-29	9	110	10	107	B-MYB
1gv2_A	8e-29	9	107	7	105	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10058s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006395314.1	3e-66	transcription factor MYB117
Swissprot	Q9SEZ4	4e-48	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A087GAL3	1e-66	A0A087GAL3_ARAAL; Uncharacterized protein
STRING	Bostr.10058s0030.1.p	1e-157	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6300	18	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39700.1	5e-64	myb domain protein 89

Link Out ? help Back to Top
Phytozome	Bostr.10058s0030.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]