PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10064s0010.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

NAC

Protein Properties

Length: 158aa MW: 18465.2 Da PI: 9.2473

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10064s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	111.3	1.1e-34	4	131	7	128
NAM 7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 F+Pt+eelv++yLk+k g++ ++e+i+e++ ++++P+ Lp +k+++++ +wyfFs+ + ++a+++ +r+t sg+W tgkd+ + Bostr.10064s0010.1.p 4 FSPTEEELVNHYLKNKNLGNTWLVDEAISEINFLSYNPEFLPclAKIQSDDLKWYFFSRLEYTNAKKHAIKRSTGSGFWMPTGKDRIIR 92 9******************999999***********6558888888********************************* PP NAM 94 skkgelvglkktLvfykgrapkge....ktdWvmheyrl 128 k+g ++glkktLv+++ +a +g +tdWvmheyr+ Bostr.10064s0010.1.p 93 GKDGVEIGLKKTLVYHERKAFNGFlngiRTDWVMHEYRI 131 ************888765433333*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.827	1	149	IPR003441	NAC domain
Pfam	PF02365	1.5E-21	3	131	IPR003441	NAC domain
SuperFamily	SSF101941	6.41E-39	4	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MVIFSPTEEE LVNHYLKNKN LGNTWLVDEA ISEINFLSYN PEFLPCLAKI QSDDLKWYFF 60 SRLEYTNAKK HAIKRSTGSG FWMPTGKDRI IRGKDGVEIG LKKTLVYHER KAFNGFLNGI 120 RTDWVMHEYR ITCLPPYQRT YVIRQVMYKD KDGVTTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-18	4	131	21	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269\|PubMed:17098812}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10064s0010.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Stabilized by cytokinins. {ECO:0000269\|PubMed:17098812}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428489.1	7e-66	PREDICTED: NAC domain-containing protein 69-like
Swissprot	A8MQY1	2e-58	NAC68_ARATH; NAC domain-containing protein 68
TrEMBL	A0A1J3F362	2e-59	A0A1J3F362_NOCCA; NAC domain-containing protein 69 (Fragment)
STRING	Bostr.10064s0010.1.p	1e-115	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1982	19	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01520.1	1e-62	NAC domain containing protein 67

Link Out ? help Back to Top
Phytozome	Bostr.10064s0010.1.p

Publications ? help Back to Top
Guo T, et al. Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana. Mol Plant, 2017. 10(10): p. 1334-1348 [PMID:28943325]