PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10064s0051.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 359aa    MW: 41133.2 Da    PI: 10.0815
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10064s0051.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-154187148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g WT eEdell +av+ + g+ Wk+Ia++++ g  + qc++rw+k+l
  Bostr.10064s0051.1.p 41 KGGWTFEEDELLRNAVESYKGKKWKKIAECVP-GFNDVQCQHRWLKVL 87
                          688*****************************.************986 PP
2Myb_DNA-binding476e-1593143148
                           TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                           +g+W +eEd+ll ++vk +  +   +W++I++ ++ gR +kqc++rw+++l
  Bostr.10064s0051.1.p  93 KGPWKKEEDDLLSELVKDYMENdrpQWSKISKQLPAGRNGKQCRERWHNHL 143
                           79*******************9***************************97 PP
3Myb_DNA-binding54.62.5e-17149191145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + +WT eE+++lv+a +++G++ W+ Ia+ ++ gRt++++k++w+
  Bostr.10064s0051.1.p 149 KTPWTGEEELILVQAQREHGNK-WAEIAKLLP-GRTENNIKNHWN 191
                           579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.433691IPR017930Myb domain
SMARTSM007173.0E-144089IPR001005SANT/Myb domain
PfamPF002495.0E-134187IPR001005SANT/Myb domain
SuperFamilySSF466894.38E-1842110IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-204399IPR009057Homeodomain-like
CDDcd001678.68E-124487No hitNo description
SMARTSM007174.0E-1692145IPR001005SANT/Myb domain
PROSITE profilePS5129415.29293143IPR017930Myb domain
CDDcd001671.82E-1095143No hitNo description
PfamPF139213.4E-1696157No hitNo description
Gene3DG3DSA:1.10.10.604.2E-23100150IPR009057Homeodomain-like
SuperFamilySSF466894.26E-27128200IPR009057Homeodomain-like
PROSITE profilePS5129425.357144198IPR017930Myb domain
SMARTSM007171.6E-16148196IPR001005SANT/Myb domain
CDDcd001672.38E-11151191No hitNo description
Gene3DG3DSA:1.10.10.601.1E-21151198IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTDLNRSESE SDISAEVTPT FAIDSVRGYK RVSGPTRRST KGGWTFEEDE LLRNAVESYK  60
GKKWKKIAEC VPGFNDVQCQ HRWLKVLNPS IYKGPWKKEE DDLLSELVKD YMENDRPQWS  120
KISKQLPAGR NGKQCRERWH NHLNPTIKKT PWTGEEELIL VQAQREHGNK WAEIAKLLPG  180
RTENNIKNHW NCSVKRRLEQ FPSAKSPQRN SLELTLRPMN WRNTPLSTSS LRGDESISSS  240
VESDWSRLNV SESLETPQSS YGNGCIQKVK KLVKERLRMA ASTFNTPSII SKRSSPASGL  300
KRHREKDDTP FQIDARSHMS SEEEHSASTC PFSKYRSVKR NTSSGSKPLE RRLEFDSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-55441989159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-55441989159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10064s0051.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020878065.11e-180transcription factor MYB3R-2 isoform X1
SwissprotQ9SPN31e-164MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLD7M5M81e-179D7M5M8_ARALL; Uncharacterized protein
STRINGBostr.10064s0051.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-163myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]