PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10199s0068.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 336aa    MW: 37957.5 Da    PI: 9.0528
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10199s0068.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-091256345
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                           W+ ++d  +  a + +  +   +W++Ia  ++ g+tl+q+k++++
  Bostr.10199s0068.1.p 12 TWSRDDDIAFETALATYTDEtenRWEKIATVVP-GKTLEQIKEHYN 56
                          7*****************99*************.***********7 PP
2Myb_DNA-binding38.52.7e-12120164347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT  E+ +++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Bostr.10199s0068.1.p 120 AWTSTEHRQFLIGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 164
                           6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.919862IPR017884SANT domain
SMARTSM007171.8E-9961IPR001005SANT/Myb domain
SuperFamilySSF466891.72E-111167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-51258IPR009057Homeodomain-like
CDDcd001675.77E-91256No hitNo description
PfamPF002493.8E-71256IPR001005SANT/Myb domain
PROSITE profilePS5129416.972112169IPR017930Myb domain
SuperFamilySSF466891.36E-15114169IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-16117167IPR006447Myb domain, plants
SMARTSM007173.4E-8117167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-10120164IPR009057Homeodomain-like
PfamPF002496.8E-10120164IPR001005SANT/Myb domain
CDDcd001677.10E-8120165No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTFEEKISFG STWSRDDDIA FETALATYTD ETENRWEKIA TVVPGKTLEQ IKEHYNILVR  60
DVMMIESGCV PLPDYDFSEE PNHDASDKEI SILECGNSPR CEFKQKGKSK LKQKRRKGIA  120
WTSTEHRQFL IGLEKYGKGD WRSISRNFVV TRTPTQVASH AQKYFARLNS KNKNRNRPSI  180
HDITVAENKY ISTNQRAITW QNRNINLAAS SNNQAIQTTS QPSLDLPIHG RPNIWNTQAK  240
QAISQPSLNH PTYGGCTIWN TQAPLQPSNN IPVYRTSTIS QPMVGPMLSP FGTNMNRQAQ  300
PHMTSGIQHY SVPYHSGPSA PINMDSIPFD SDLFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-141075873RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10199s0068.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872065.10.0transcription factor SRM1
SwissprotQ9FNN61e-95SRM1_ARATH; Transcription factor SRM1
TrEMBLD7M2B80.0D7M2B8_ARALL; Predicted protein
STRINGBostr.10199s0068.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133911628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23650.11e-164Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]