PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0116.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 227aa MW: 25629.4 Da PI: 9.7526

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0116.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66	3.8e-21	50	98	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k i+ + +rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + Bostr.10273s0116.1.p 50 KEIKVENRRQVTFSKRRLGLFKKAAELSVLCGAQIGIITFSRCNRIYAF 98 5688899**************************************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.5E-25	42	101	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.684	42	102	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.15E-22	42	113	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-19	44	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.1E-21	52	98	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-19	64	79	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.0E-19	79	100	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MEDGEASTIT CLPPTKQKPL QNPNLLVNQK KGSKLQKPKT TKGRQKIEIK EIKVENRRQV 60 TFSKRRLGLF KKAAELSVLC GAQIGIITFS RCNRIYAFGN VDTLIDKYIR KTPVMLRSNP 120 GGDVATGEEN NDGLMWWERA VESVPEEEME EYKKALSVLR ENLLTRIYQM GNDRTAENLP 180 AFPNEMAMAD WKLTNENLMA RNDRGYVGND GGLDFAVPFM SQKGRQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1egw_A	4e-14	43	111	1	67	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_B	4e-14	43	111	1	67	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_C	4e-14	43	111	1	67	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
1egw_D	4e-14	43	111	1	67	MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A
3kov_A	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3kov_B	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3kov_I	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3kov_J	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_A	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_B	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_C	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_D	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_I	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
3p57_J	4e-14	43	111	1	67	Myocyte-specific enhancer factor 2A
5f28_A	4e-14	43	111	2	68	MEF2C
5f28_B	4e-14	43	111	2	68	MEF2C
5f28_C	4e-14	43	111	2	68	MEF2C
5f28_D	4e-14	43	111	2	68	MEF2C
6byy_C	5e-14	43	139	2	90	MEF2 CHIMERA
6byy_D	5e-14	43	139	2	90	MEF2 CHIMERA
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0116.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC016529	0.0	AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence.
GenBank	AY141235	0.0	AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds.
GenBank	BT025647	0.0	BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBank	DQ446421	0.0	DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds.
GenBank	DQ652929	0.0	DQ652929.1 Arabidopsis thaliana clone 0000018934_0000013069 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006301410.1	1e-144	agamous-like MADS-box protein AGL61
TrEMBL	R0ICD3	1e-142	R0ICD3_9BRAS; Uncharacterized protein
STRING	Bostr.10273s0116.1.p	1e-167	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4697	20	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72350.1	1e-119	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Bostr.10273s0116.1.p