PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0148.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 417aa    MW: 47183.8 Da    PI: 7.7599
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0148.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.00113456123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          y C++Cg s s k++ ++Hi++H
  Bostr.10273s0148.1.p 34 YLCQYCGISRSKKYLITSHIQSH 56
                          56********************6 PP
2zf-C2H220.11.7e-0680102123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C+ Cg  F+ + +Lk+H+++H
  Bostr.10273s0148.1.p  80 HTCQECGAEFKKPAHLKQHMQSH 102
                           79*******************99 PP
3zf-C2H215.16.4e-05108132123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C   dC  s++rk++L+rH+ tH
  Bostr.10273s0148.1.p 108 FPCYvdDCAASYRRKDHLNRHLLTH 132
                           789999*****************99 PP
4zf-C2H211.50.00096137162123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           +kCp  +C+  Fs + n  rH ++ H
  Bostr.10273s0148.1.p 137 FKCPmeNCKSEFSVQGNVSRHVKKyH 162
                           89*********************999 PP
5zf-C2H222.72.6e-07219243123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ++C+   Cgk F+ +s+Lk+H+ +H
  Bostr.10273s0148.1.p 219 HVCKeiGCGKAFKYPSQLKKHQDSH 243
                           79********************998 PP
6zf-C2H217.89.1e-06309334123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           +kC+   C+ +Fs  snL++H +  H
  Bostr.10273s0148.1.p 309 FKCEveGCSSTFSKASNLQKHVKAvH 334
                           89*******************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355183456IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-47999IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.001580102IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.00480107IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SuperFamilySSF576671.49E-1093134No hitNo description
Gene3DG3DSA:3.30.160.601.5E-12100134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.18108132IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.764108137IPR007087Zinc finger, C2H2
PROSITE patternPS000280110132IPR007087Zinc finger, C2H2
SuperFamilySSF576674.11E-5135163No hitNo description
SMARTSM003550.16137162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159137167IPR007087Zinc finger, C2H2
PROSITE patternPS000280139162IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-6214245No hitNo description
Gene3DG3DSA:3.30.160.601.9E-7214243IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0024219243IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.928219248IPR007087Zinc finger, C2H2
PROSITE patternPS000280221243IPR007087Zinc finger, C2H2
SMARTSM003552.3251276IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280253276IPR007087Zinc finger, C2H2
SMARTSM0035522279300IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.16E-8290344No hitNo description
Gene3DG3DSA:3.30.160.608.1E-8290331IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003554.8E-4309334IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.84309339IPR007087Zinc finger, C2H2
PROSITE patternPS000280311334IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-4333360IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.1340366IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280342366IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEINPSSCVD NQREMAEEAN VDVKASTKKD IRNYLCQYCG ISRSKKYLIT SHIQSHHQME  60
LEEERDDGAC EVEEETSSKH TCQECGAEFK KPAHLKQHMQ SHSLERPFPC YVDDCAASYR  120
RKDHLNRHLL THKGKFFKCP MENCKSEFSV QGNVSRHVKK YHSNDDSGKD NTGNGASDKD  180
KSGRGGSDKE NTRNGDSLKD NTGNCDSQPS ECSTGQKLHV CKEIGCGKAF KYPSQLKKHQ  240
DSHVKLDSVE AFCSELGCMK YFTNEECLKA HIRSCHQHIN CEICGSKHLK KNIKRHLRTH  300
DEDSSPGEFK CEVEGCSSTF SKASNLQKHV KAVHEDIRPF VCGFPGCGMR FAYKHVRNNH  360
ENSGCHVYTC GDFVETDEDF TSRPRGGLKR KQVTAEMLIR KRVMPPRFGS EEPETC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wjq_D1e-14323607275Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0148.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304780.0AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY0542250.0AY054225.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY0660420.0AY066042.1 Arabidopsis thaliana At1g72050/F28P5_6 mRNA, complete cds.
GenBankAY1866100.0AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322779.10.0transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1P8AV270.0A0A1P8AV27_ARATH; Transcription factor IIIA
STRINGBostr.10273s0148.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47142852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA