PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0152.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family TCP
Protein Properties Length: 377aa    MW: 39664.9 Da    PI: 8.9912
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0152.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.17.4e-3963152494
                   TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 
                            k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++  ++s +  +s  ++ ++ 
  Bostr.10273s0152.1.p  63 VKKPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStLNASLRGGGS--TIFAQP 149
                           5899*************************************************************9988842222222222..222222 PP

                   TCP  92 ksa 94 
                           +++
  Bostr.10273s0152.1.p 150 SKS 152
                           222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.03167121IPR017887Transcription factor TCP subgroup
PfamPF036343.4E-3567172IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MELRTNQNSG VATAAEATLQ LNSGEKPSPG SNPFVGAIST TSSTSNSTST SSGSALSVVK  60
SAVKKPSKDR HTKVDGRGRR IRMPAMCAAR VFQLTRELGH KSDGETIEWL LQQAEPAIIA  120
STGTGTIPAN FSTLNASLRG GGSTIFAQPS KSSSSPLSFH STGMSLYEDS NGTNGSSVDP  180
SRKLLNSAVF GFHHQMYPPI MSTERTPSNL VKPYREDYFK ESSSGTEPSG SSQKQGQFQD  240
QELGPGRATA NVVPQPMWAV APGTTNGGSA FWMLPMSGSG GREQMQQQPG HQMWAFNPGN  300
YPVGSGRVVT APMGSMMLGG QQLGLGVAES NMAAAMRGSS SRGDGLAMTL DQHQHQHQHQ  360
EPNQTQATEN GGDDKT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0152.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0692730.0AC069273.4 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence.
GenBankAY0807760.0AY080776.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankAY1504880.0AY150488.1 Arabidopsis thaliana unknown protein (At1g72010) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301977.10.0transcription factor TCP22
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLR0I9T30.0R0I9T3_9BRAS; Uncharacterized protein
STRINGBostr.10273s0152.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-179TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]