PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0203.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 185aa    MW: 20221.4 Da    PI: 6.2349
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0203.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-162473255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e Aa a++ a+  ++g
  Bostr.10273s0203.1.p 24 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEIAATAYDVAAFHFRG 73
                          69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.94E-302383No hitNo description
SuperFamilySSF541711.24E-212382IPR016177DNA-binding domain
PROSITE profilePS5103223.4592481IPR001471AP2/ERF domain
PfamPF008471.3E-92473IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-312482IPR001471AP2/ERF domain
SMARTSM003807.7E-362487IPR001471AP2/ERF domain
PRINTSPR003678.1E-132536IPR001471AP2/ERF domain
PRINTSPR003678.1E-136383IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAGHGNSSNS DKAHNDGQAG IPSAYRGVRK RKWGKWVSEI REPGTKNRIW LGSFETPEIA  60
ATAYDVAAFH FRGREARLNF PELASTLPRP ADSSSDSIRM AAHEATLCHR TQAVDSAMQV  120
DSSSSSAVSP MMVRLSPREI QAINESTLGS PTMWMHSTDD CMGFANDVGM NVWDTYQSDS  180
LWDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-172581663ATERF1
3gcc_A5e-172581663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0203.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-170AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-170AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-170BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-170BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-170CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006301876.11e-120ethylene-responsive transcription factor ERF021
SwissprotQ9C9I21e-111ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLR0HY231e-118R0HY23_9BRAS; Uncharacterized protein
STRINGBostr.10273s0203.1.p1e-135(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-100ERF family protein