PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0405.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ZF-HD
Protein Properties Length: 245aa    MW: 26531.8 Da    PI: 8.0734
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0405.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1071.1e-332785259
           ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59
                          ++v YkeClkNhAa+lGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr+++e
  Bostr.10273s0405.1.p 27 MGVCYKECLKNHAANLGGHALDGCGEFMPSPTATsTDPSSLRCAACGCHRNFHRRDPSE 85
                          5789***************************999899******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-182982IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-272982IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.9E-313182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.4013182IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.14E-16147214IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-25148214IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-26156213IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDLSSKPKQQ FIISLPVTGG LTIAGEMGVC YKECLKNHAA NLGGHALDGC GEFMPSPTAT  60
STDPSSLRCA ACGCHRNFHR RDPSENLNFL TAPPISSPSG TESPPSHHVS SPVPCSYYTS  120
APSHHVLLSL SSGFPGPSDQ DPTVVRSDNS SRGAMRKRAR TKFTPEQKIR MRAFAEKAGW  180
KINGCDEKSV REFCNEVEIE RGVLKVWMHN NKYSLLNGKN REIEHGLCLN THSCNNDVDG  240
SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A5e-181552141675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0405.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0210460.0AC021046.2 Arabidopsis thaliana chromosome 1 BAC F24J1 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302745.11e-165zinc-finger homeodomain protein 11
SwissprotQ9SEZ11e-163ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLR0IFT81e-164R0IFT8_9BRAS; Uncharacterized protein
STRINGBostr.10273s0405.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51662549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-141zinc finger homeodomain 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]