PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0409.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 296aa    MW: 34706.1 Da    PI: 8.0687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0409.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-1672117147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 
  Bostr.10273s0409.2.p  72 RGHWRPAEDAKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 117
                           899*****************************.***********996 PP
2Myb_DNA-binding60.43.7e-19124167146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 
  Bostr.10273s0409.2.p 124 RRAFTEEEEERLMQAHRLHGNK-WAMIARLFP-GRTDNSVKNHWHV 167
                           678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.06967118IPR017930Myb domain
SuperFamilySSF466895.74E-2970165IPR009057Homeodomain-like
SMARTSM007175.0E-1471120IPR001005SANT/Myb domain
PfamPF002495.1E-1672117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-2773125IPR009057Homeodomain-like
CDDcd001673.45E-1275116No hitNo description
PROSITE profilePS5129427.164119173IPR017930Myb domain
SMARTSM007174.3E-15123171IPR001005SANT/Myb domain
PfamPF002495.2E-16124166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-22126172IPR009057Homeodomain-like
CDDcd001672.04E-11126166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSEDHHRWMD QIASSDYFSL NINNDQHLHS YHTSHREEEI RNSDLSDYSS CNKKDTAHYE  60
SCGHSSKASV SRGHWRPAED AKLKELVAVY GPQNWNLIAE KLQGRSGKSC RLRWFNQLDP  120
RINRRAFTEE EEERLMQAHR LHGNKWAMIA RLFPGRTDNS VKNHWHVIMA RKFREQSSTY  180
RRRKTMLPLK PLIKPNPHLF NYFDPTRLSL THLVTNDQKQ LMLPIPCFPG YDHGNESPLM  240
VDMFENQMMV GDYIAWTQEA TTFDFLNQTG KSEMFERMDV EKKPPFFDFL GLGTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-32701735108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0409.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2493080.0AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887243.20.0LOW QUALITY PROTEIN: transcription factor MYB105
SwissprotQ9SEZ40.0MY105_ARATH; Transcription factor MYB105
TrEMBLD7KXG80.0D7KXG8_ARALL; MYB105
STRINGBostr.10273s0409.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.10.0myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]