PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10273s0456.2.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

SBP

Protein Properties

Length: 415aa MW: 46726 Da PI: 7.1462

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10273s0456.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	134.8	2.8e-42	131	206	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv gC++dls+ k+yh+rh+vCe+hsk++vv+v+gle+rfCqqCsrfh lsefD++krsCrrrLa+hnerrrk++ Bostr.10273s0456.2.p 131 CQVYGCNMDLSSSKDYHKRHRVCETHSKTSVVIVNGLEKRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKPA 206 **************************************************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.1E-33	126	192	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.744	128	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.02E-39	129	208	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-32	131	204	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010468	Biological Process	regulation of gene expression
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence Send to blast
MDSWSYGRSV FLANGTLLPS DSFAENRKFE QRLSNGLEND DDVLISDMAG DSNGFSAVSI 60 SKVVPSNLLH EEEEKKQSSS SKFSSQELTR IDFKLRSILD LGNDDDTSSR GFALPAKKPR 120 ASNLCSQKPL CQVYGCNMDL SSSKDYHKRH RVCETHSKTS VVIVNGLEKR FCQQCSRFHF 180 LSEFDDGKRS CRRRLAGHNE RRRKPAFYFL PGNRHKLLRT SQGVVGNKFL ENASINDFSL 240 VLPEEFPGTF LYRVTDEHDP RASKLVSFKD EPTCSMFPAI GQNSSRIYES KPAIYSPEVS 300 SIWDLHEAAS RSTFALSLLS AQSQQHISEI PNTTFSITQP NQNPNHSPVD YNQMEWLWID 360 PGKTNSAGSS SCTVKGSSTV DLLQLSSHLQ RIEQQRNFTD DVKHEYNELY FTGS*

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence Send to blast

MDSWSYGRSV FLANGTLLPS DSFAENRKFE QRLSNGLEND DDVLISDMAG DSNGFSAVSI  60
SKVVPSNLLH EEEEKKQSSS SKFSSQELTR IDFKLRSILD LGNDDDTSSR GFALPAKKPR  120
ASNLCSQKPL CQVYGCNMDL SSSKDYHKRH RVCETHSKTS VVIVNGLEKR FCQQCSRFHF  180
LSEFDDGKRS CRRRLAGHNE RRRKPAFYFL PGNRHKLLRT SQGVVGNKFL ENASINDFSL  240
VLPEEFPGTF LYRVTDEHDP RASKLVSFKD EPTCSMFPAI GQNSSRIYES KPAIYSPEVS  300
SIWDLHEAAS RSTFALSLLS AQSQQHISEI PNTTFSITQP NQNPNHSPVD YNQMEWLWID  360
PGKTNSAGSS SCTVKGSSTV DLLQLSSHLQ RIEQQRNFTD DVKHEYNELY FTGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-30	130	204	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10273s0456.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ011643	0.0	AJ011643.1 Arabidopsis thaliana (ecotype Columbia) mRNA for squamosa promoter binding protein-like 6.
GenBank	AK227964	0.0	AK227964.1 Arabidopsis thaliana mRNA for squamosa promoter binding protein-like 6, complete cds, clone: RAFL14-51-E10.
GenBank	BT006436	0.0	BT006436.1 Arabidopsis thaliana At1g69170 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006300490.1	0.0	squamosa promoter-binding-like protein 6 isoform X2
Refseq	XP_023644067.1	0.0	squamosa promoter-binding-like protein 6 isoform X2
Swissprot	Q94JW8	0.0	SPL6_ARATH; Squamosa promoter-binding-like protein 6
TrEMBL	R0IA10	0.0	R0IA10_9BRAS; Uncharacterized protein
STRING	Bostr.10273s0456.1.p	0.0	(Boechera stricta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69170.1	0.0	SBP family protein

Link Out ? help Back to Top
Phytozome	Bostr.10273s0456.2.p

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]