PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0468.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 315aa    MW: 34727.2 Da    PI: 5.4414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0468.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.2e-155099255
                          HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          r +h+  E+rRR++iN++f+ Lrel+P++     +K + a+ L ++++Y+++Lq
  Bostr.10273s0468.1.p 50 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 99
                          899*************************8....79******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1846119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-2247121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.3554898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.00E-1450103No hitNo description
PfamPF000109.2E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1154104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MRTGKGNQEE EDYGEEDFSS KREGPSSNTT VHSNNSNRDA KDSDKASAIR SKHSVTEQRR  60
RSKINERFQI LRELIPNSEQ KRDTASFLLE VIDYVQYLQE KVQKYEGSYP GWSQEPTKLT  120
PWRNNHWRVQ SLANHPVAIN NGSGPGISYP GKFEENTVTL TPAIVAEPQI PIESDKGRAI  180
TGKPIESQPE LDNKGLPPVQ PILPLIQGEQ ANECPATSDG LGQSNDLVIE GGTISISSVY  240
SHELLSSLTQ ALQNAGIDLS HAKLSVQIDL GKRANQGLTH DEPSSKNPLS SDTQARDPSV  300
EEESEHSHKR MKTL*
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0468.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0023520.0BT002352.1 Arabidopsis thaliana clone C104950 putative DNA-binding protein (At1g69010) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006302571.10.0transcription factor BIM2 isoform X1
SwissprotQ9CAA40.0BIM2_ARATH; Transcription factor BIM2
TrEMBLR0I0050.0R0I005_9BRAS; Uncharacterized protein
STRINGBostr.10273s0468.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59872745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.10.0BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]