PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10273s0480.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bZIP
Protein Properties Length: 139aa    MW: 16233.5 Da    PI: 9.3591
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10273s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.98e-1245105363
                           XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                           + ++ rrk +NRe+ArrsR RK+  ++eL     +L +eNk L +el++ ++ ++k+  e+
  Bostr.10273s0480.1.p  45 DERKRRRKLSNRESARRSRMRKRRHMDELCSMLVQLINENKCLVDELSRARESYEKVIEEN 105
                           5578899************************************************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-1138101No hitNo description
SMARTSM003385.0E-1543107IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.90945108IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.31E-104798No hitNo description
PfamPF001704.0E-947105IPR004827Basic-leucine zipper domain
CDDcd147021.23E-74898No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAGFVYNLPC ENPNPQSLCQ TFVDRVPLLN LPATSDDSSR SAEDDERKRR RKLSNRESAR  60
RSRMRKRRHM DELCSMLVQL INENKCLVDE LSRARESYEK VIEENMKFRE ENSKSRKMIG  120
EIGLNRRLNV EGDKIWTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552ERKRRRKL
24650RKRRR
34967RRKLSNRESARRSRMRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10273s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935281e-157AB493528.1 Arabidopsis thaliana At1g68880 mRNA for hypothetical protein, partial cds, clone: RAAt1g68880.
GenBankAC0116651e-157AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence.
GenBankAC0119141e-157AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence.
GenBankAF4006211e-157AF400621.1 Arabidopsis thaliana transcription factor-like protein bZIP8 mRNA, complete cds.
GenBankBT0248171e-157BT024817.1 Arabidopsis thaliana At1g68880 gene, complete cds.
GenBankCP0026841e-157CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177054.11e-78basic leucine-zipper 8
SwissprotQ9CA461e-79BZIP8_ARATH; Basic leucine zipper 8
TrEMBLA0A178WI502e-76A0A178WI50_ARATH; BZIP
STRINGBostr.10273s0480.1.p2e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150351619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68880.11e-55basic leucine-zipper 8
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]