PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.1040s0072.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 301aa    MW: 33890.1 Da    PI: 8.0422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.1040s0072.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.5e-06142161120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C k+F+r  nL+ H+
  Bostr.1040s0072.1.p 142 FSCHVCFKTFNRYNNLQMHM 161
                          89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.19E-5122164No hitNo description
PROSITE profilePS5015710.055142169IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4142161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
SuperFamilySSF576672.39E-5207246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009813Biological Processflavonoid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MESPQYEISS SSSSEKPRHH FQSLDLFPNL SQNSCNNNTL IESLPLIDRI NLNPNLDLNP  60
KPLYGDEGDQ EEEGEEDAEV DVNLHLGLPG FGKSSNGAKQ PKKTNGKEIV TYDAGKDIEN  120
DVSGKAYWIP APEQILIGFT HFSCHVCFKT FNRYNNLQMH MWGHGSQYRK GPESLKGTQP  180
RAMLGIPCYC CVDGCRNHID HPRSKPLKDF RTLQTHYKRK HGHKPYSCRL CGKLLAVKGD  240
WRTHEKNCGK RWVCVCGSDF KHKRSLKDHV KAFGPGHGPY PTGLFEEQAS NSSVSETLFF  300
*
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269|PubMed:11782451, ECO:0000269|PubMed:21477081}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.1040s0072.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304770.0AJ630477.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g34790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_174737.20.0C2H2 and C2HC zinc fingers superfamily protein
SwissprotQ8VWG30.0TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLQ700E70.0Q700E7_ARATH; At1g34790
STRINGBostr.1040s0072.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.11e-176C2H2 family protein
Publications ? help Back to Top
  1. Lian J, et al.
    Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus.
    Plant Sci., 2017. 254: p. 32-47
    [PMID:27964783]