PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10689s0049.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 191aa    MW: 21566.7 Da    PI: 8.0148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10689s0049.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.5e-121764655
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                          + +E++RR +++s ++eL +llP+ +   + + l+  + L +A +YIk+Lq
  Bostr.10689s0049.1.p 17 KTVEKNRRMQMKSLYSELISLLPHhS---SREPLNLPDQLDEAANYIKKLQ 64
                          789*********************44...7777*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.4711163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.02E-51168No hitNo description
SuperFamilySSF474593.22E-101278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-81677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-71764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00551769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEPSHSNTAP SRSVDRKTVE KNRRMQMKSL YSELISLLPH HSSREPLNLP DQLDEAANYI  60
KKLQVNVEKK RERKRKLVAT ATFEKLNSPG SSLVSSSVDV SVPRRLPKIE IQETGSILHI  120
FLVTSLEHKF MFCEIVRVLT EELGAEITHA GCSIVDDAVF HTLHCKVEEC DYGARSQIPE  180
RLEKFVNSVN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16776EKKRERKRKL
26976KRERKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10689s0049.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936860.0AB493686.1 Arabidopsis thaliana At4g20970 mRNA for hypothetical protein, partial cds, clone: RAAt4g20970.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439537.11e-126PREDICTED: transcription factor bHLH36-like
SwissprotF4JIJ71e-114BH162_ARATH; Transcription factor bHLH162
TrEMBLR0F6L91e-117R0F6L9_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.10689s0049.1.p1e-137(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-108bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]