PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.10689s0057.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Dof
Protein Properties Length: 255aa    MW: 28658.3 Da    PI: 8.6526
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.10689s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof114.44.9e-362177561
                zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                           + cprC+s+ntkfCyynnys+sqPry Ck+CrryWt+GGalrn+P+Gg++rk k++
  Bostr.10689s0057.1.p 21 PRVCPRCNSDNTKFCYYNNYSVSQPRYSCKNCRRYWTHGGALRNIPIGGSCRKVKRA 77
                          578**************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-251976IPR003851Zinc finger, Dof-type
PfamPF027011.3E-312276IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.0342276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MDNLNVFANE DNQVNEVKPP PRVCPRCNSD NTKFCYYNNY SVSQPRYSCK NCRRYWTHGG  60
ALRNIPIGGS CRKVKRARVD QSSVSRMVSA DIQQVNHQPF SYVQENNEFV GSIGASSSSS  120
SSAAVGNHFG SLSDIHGGMV TNVPPSRSFR PSFRPNHRLD FHDGSFEQDY YDVGSDNPLI  180
NQSIGGYVDD HNVYRMNQVD QHKWNQSFNN TTNMNHNAST SGSRGSDMNM NSDKNKNRYN  240
SVIRHPCHLE KHGP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00446DAPTransfer from AT4G21080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.10689s0057.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439522.11e-131PREDICTED: dof zinc finger protein DOF4.5-like
SwissprotO495501e-102DOF45_ARATH; Dof zinc finger protein DOF4.5
TrEMBLR0GXA81e-106R0GXA8_9BRAS; Uncharacterized protein
STRINGBostr.10689s0057.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21080.17e-98Dof-type zinc finger domain-containing protein