PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.10689s0083.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

bHLH

Protein Properties

Length: 295aa MW: 33495.2 Da PI: 4.7348

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.10689s0083.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.7	3.1e-06	184	223	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L++l+ + +K + a++L A+eYIk Lq Bostr.10689s0083.1.p 184 VRKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 223 577888999******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.639	173	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.38E-6	183	226	No hit	No description
SuperFamily	SSF47459	4.58E-11	183	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0016	184	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-9	187	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTEEFDTAGV FTGTWWSSSN TMFSGCSLPR SAEIVVDTLD AKTYNENYLN TSTFLGNANI 60 DSTSQIYVSS QSNLHEEERF NPINSFLEGL FDFNEQLLVP NCPKPELFES FHFFDDVFLN 120 ESRMVSVFDH EIKDKPKDDM QACKSLIPCK RVSEKTEECE DIESSQPLKR PRLETPSHFP 180 SFKVRKEKLG DRITALQQLV SPFGKTDTAS VLHDAIEYIK FLQEQITDKV STSPHLNSRG 240 SGEQKQWSEI SSSNTHDQDC NPRQDLRSRG LCLMPISSTF STSPRHLDTS SFWN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.10689s0083.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065362	0.0	AY065362.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.
GenBank	AY122937	0.0	AY122937.1 Arabidopsis thaliana unknown protein (At4g21340) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_193865.2	0.0	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Swissprot	Q8VZ22	0.0	BH103_ARATH; Transcription factor bHLH103
TrEMBL	A0A178V325	0.0	A0A178V325_ARATH; B70
STRING	Bostr.10689s0083.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14712	14	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21340.1	0.0	bHLH family protein

Link Out ? help Back to Top
Phytozome	Bostr.10689s0083.1.p

Publications ? help Back to Top
Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. Genet. Res., 2006. 88(1): p. 45-56 [PMID:17014743]