PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11568s0008.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family AP2
Protein Properties Length: 421aa    MW: 46245.5 Da    PI: 8.9486
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11568s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-1369125155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  Bostr.11568s0008.1.p  69 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 125
                           57*******************6666777775555599******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.9E-969125IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-1569134IPR016177DNA-binding domain
SMARTSM003805.3E-1970139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-1270134IPR001471AP2/ERF domain
PROSITE profilePS5103218.51870133IPR001471AP2/ERF domain
PRINTSPR003674.1E-57182IPR001471AP2/ERF domain
PRINTSPR003674.1E-5115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MASVSSSDHG PKTEAGCSGG GGGESTETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP  60
PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQGAYDDEE AAARAYDLAA  120
LKYWGPGTLI NFPVTDYTRD LEEMQNLSRE EYLASLRRKS SGFSRGIAKY RGLQSRWDAS  180
ASRMPGPEYF SNIHYGTGDD RGTEGDFLGS FCLERKIDLT GYIKWWGVNK TRQPESSSKA  240
SEDAKFEDAG TELKTLEHTS QATEPYKAPN LGVLRGTQRK EKGISSPPSS SALSILSQSP  300
AYKSLEEKVL KIQESSTNEN DENANRNIIN MEKNHGKAIE KPVVSHGVAL GSAAALSLQK  360
SMYPLTSLLT APLLSNYNTL DPLADPILWT PFLPSGSSHT SEVTKTETSC STYSYLPQDK  420
*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.11568s0008.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0881180.0AY088118.1 Arabidopsis thaliana clone 41462 mRNA, complete sequence.
GenBankBT0259850.0BT025985.1 Arabidopsis thaliana At2g41710 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884200.10.0AP2-like ethylene-responsive transcription factor At2g41710 isoform X2
SwissprotQ8GWK20.0AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLD7LHA70.0D7LHA7_ARALL; Uncharacterized protein
STRINGBostr.11568s0008.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.10.0AP2 family protein