PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11568s0011.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family HSF
Protein Properties Length: 236aa    MW: 27393.4 Da    PI: 4.9955
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11568s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1149.8e-36321242103
                           HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
          HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                           Fl k+y+++ed++++e+isw+e+g+ fvv+++ ef++++Lp+ Fkh nf+SFvRQLn+YgF+kv++++         weF+++ F+kg+
  Bostr.11568s0011.1.p  32 FLVKTYKVVEDPTTDEVISWNEDGTGFVVWQPAEFSRDLLPTLFKHCNFSSFVRQLNTYGFRKVTTTR---------WEFSNEMFQKGQ 111
                           9****************************************************************999.........************ PP

                           XXXXXXXXXXXXX CS
          HSF_DNA-bind  91 kellekikrkkse 103
                           +el+++i+r+ks+
  Bostr.11568s0011.1.p 112 RELMSNIRRRKSN 124
                           **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.1E-5628121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-3729121IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.98E-3329121IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-3132121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-183255IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-187082IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407195IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNDEELLPLE FMIGKSTSTA EIQPPPPLPP PFLVKTYKVV EDPTTDEVIS WNEDGTGFVV  60
WQPAEFSRDL LPTLFKHCNF SSFVRQLNTY GFRKVTTTRW EFSNEMFQKG QRELMSNIRR  120
RKSNHWSHNK SHHQVVPTTT VKQEDHQRLG IDHHHEDQRS SSTSSSFEYT ALLDENKCLK  180
NENELLSSEL GKTRKKCKQL MELVERYRGE DEDETDDEDG NEEDDGLKLF GVKLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-213012118120Heat shock factor protein 1
5d5u_B3e-213012127129Heat shock factor protein 1
5d5v_B3e-213012127129Heat shock factor protein 1
5d5v_D3e-213012127129Heat shock factor protein 1
5hdg_A2e-21301218110Heat shock factor protein 1
5hdn_A2e-21301218110Heat shock factor protein 1
5hdn_B2e-21301218110Heat shock factor protein 1
5hdn_C2e-21301218110Heat shock factor protein 1
5hdn_D2e-21301218110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.11568s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0294520.0BT029452.1 Arabidopsis thaliana At2g41690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181700.11e-138heat shock transcription factor B3
SwissprotO222301e-139HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A178VUP71e-137A0A178VUP7_ARATH; HSFB3
STRINGBostr.11568s0011.1.p1e-175(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108142731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-110heat shock transcription factor B3