PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.11793s0034.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 175aa    MW: 19849.9 Da    PI: 10.2174
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.11793s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.8e-0592114123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           +kC++C+++F +   L  H+r+H
  Bostr.11793s0034.1.p  92 HKCSICDQMFGTGQALGGHMRKH 114
                           79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-104772IPR007087Zinc finger, C2H2
SuperFamilySSF576671.41E-648114No hitNo description
SMARTSM003550.434870IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9724875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
SMARTSM003550.01292114IPR015880Zinc finger, C2H2-like
PfamPF139125.9E-1092116IPR007087Zinc finger, C2H2
PROSITE profilePS501579.09992119IPR007087Zinc finger, C2H2
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MKRDRSDYKE SMKHIDIVKS LMMLSQSFVV KQIDVKQSTG SKANHIHFEC KTCNRKFDSF  60
QALGGHRASH KKPKLSVDQE QVKHRNNEND MHKCSICDQM FGTGQALGGH MRKHRASTIT  120
EQSVIPSVVY SRPVLNRCNS SKKILDLNLT PLENDLVIIF GKNLVPQIDL KFVN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.11793s0034.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329660.0AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876215.11e-117zinc finger protein ZAT11
SwissprotQ9SLD45e-76ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLD7LUK31e-115D7LUK3_ARALL; Zinc finger family protein
STRINGBostr.11793s0034.1.p1e-127(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-119C2H2 family protein