PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0070.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family ERF
Protein Properties Length: 273aa    MW: 30388.9 Da    PI: 8.1823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2082131255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Bostr.12659s0070.1.p  82 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 131
                           59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.54E-3481141No hitNo description
SMARTSM003807.4E-3882145IPR001471AP2/ERF domain
PROSITE profilePS5103223.28882139IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2382140IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-3282140IPR001471AP2/ERF domain
PRINTSPR003672.2E-118394IPR001471AP2/ERF domain
PfamPF008471.6E-1483131IPR001471AP2/ERF domain
PRINTSPR003672.2E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MATSMDFYRS KTFQESDPFG GELMEALLPF IKSPSNDSST FAFSLPAPVS YGSDLHQNHS  60
FSNHLSPKPV LMKQTAPKPT KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEEAAL  120
AYDKAAYKLR GDYARLNFPN LRHNGSNIGE YQPLQSSVNA KLEAICQNIA ETTQKQVKST  180
KKSSRKRSLT AAVKKPEVDS GVKSEDYSCA GSSPPLTESY GSGGSSSPLS DLTFTDTEEE  240
IQPPWNENFA LEKYPSYEID WDSILQSSSL VN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2181139160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0009071e-168BT000907.1 Arabidopsis thaliana clone C105186 putative AP2 domain containing protein RAP2 (At1g22190) mRNA, complete cds.
GenBankCP0026841e-168CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16L11e-168AC073942.2 Sequence of BAC F16L1 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867712.11e-165ethylene-responsive transcription factor RAP2-13
SwissprotQ9LM151e-145RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLD7KLN71e-151D7KLN7_ARALL; Uncharacterized protein
STRINGBostr.12659s0070.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-127ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]