PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0103.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 308aa    MW: 35146.5 Da    PI: 6.8058
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH482.3e-15113164155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Bostr.12659s0103.1.p 113 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 164
                           79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.58E-13111168No hitNo description
Gene3DG3DSA:4.10.280.102.7E-14112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-17112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.196112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-12113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPLEAIVYPQ DPFGYLSNCK DFMFHDLYSQ EEVVAQDTKH NIDKSGQEQI FVEHGKEEDR  60
QWRDYHQYPL LIPSLEEELG LPANDVENHP PLQQRRKRRR TRNSKNKEEI ENQRMTHIAV  120
ERNRRKQMNE YLAVLRSLMP SSYAQRGDQA SIVGGAINYV KELEHILQSM WPKRTATTST  180
THDVEGAKTS TSSLVGPFSD FFSFPQFSTK SSEVPESSSS SAEIEVTVAE SHANIKIMAK  240
KKPRQLLKLV ASLQSLRLTL LHLNVTTHHN SILYSISVRV EEGSQLNTVD DIATALNQTI  300
RRIQEES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399QRRKRRR
29599RKRRR
395100RKRRRT
4113124RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0103.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882340.0AY088234.1 Arabidopsis thaliana clone 4596 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460004.10.0PREDICTED: transcription factor bHLH94-like isoform X2
SwissprotQ9SK910.0BH094_ARATH; Transcription factor bHLH94
TrEMBLR0IHJ20.0R0IHJ2_9BRAS; Uncharacterized protein
STRINGBostr.12659s0103.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-146bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]