PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0337.2.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 432aa    MW: 48153.7 Da    PI: 9.411
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0337.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007375397123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C ++F++   L  H r+H
  Bostr.12659s0337.2.p 375 HECPICFRVFKSGQALGGHKRSH 397
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0765987IPR007087Zinc finger, C2H2
SMARTSM003553.46082IPR015880Zinc finger, C2H2-like
PfamPF139123.9E-46084IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-66182No hitNo description
PROSITE patternPS0002806182IPR007087Zinc finger, C2H2
SuperFamilySSF576671.16E-6370397No hitNo description
PROSITE profilePS501578.974375397IPR007087Zinc finger, C2H2
SMARTSM003550.14375397IPR015880Zinc finger, C2H2-like
PfamPF139123.6E-10375397IPR007087Zinc finger, C2H2
PROSITE patternPS000280377397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMNENSLDSD EDESNKLKMI DENGGQSSYG LRENPKKNKR FVDHRQMMAL KQQQQHQQLR  60
CCRECGKGFV SSKALCGHMA CHSEREKIVM DSQSDTEASS SPIRRRSKRV VVKHRHKAAF  120
VVGGNGIMNQ SNSASSDASE IEPEQEEIAL SLMMLSRDSS FKKGHNLMVN SLAESSDNNS  180
VILETKSSSG EQLKMFNVKN VEDFSKNNKL GVDNQVRSGE DNGDILYDSD NSDSGYFRNG  240
PKKLDSDVSV DGFLRNTGFD NKAVMVSRSG FNSSATKQDK NLNRFRKEWY KEGGSGSGSG  300
SGRSSTKYDL RKSKRGFPSY GRKKIKYEFN ESVYDSGEHS LETDSCADTN RTIKIHSKSP  360
MVKKASGAKK KSKGHECPIC FRVFKSGQAL GGHKRSHFIG NQEHRTLVIQ HQVAHEMHTL  420
IDLNLPAPID E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0337.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankT1K70.0AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306284.10.0uncharacterized protein LOC17900354
TrEMBLR0GTA20.0R0GTA2_9BRAS; Uncharacterized protein
STRINGBostr.12659s0337.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.10.0C2H2-like zinc finger protein