PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0339.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C2H2
Protein Properties Length: 373aa    MW: 41860.7 Da    PI: 8.934
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0339.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001931123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          ++C+ C k+F++  +L  Hir H
  Bostr.12659s0339.1.p  9 FVCKFCYKTFPSGKSLGGHIRIH 31
                          89*******************99 PP
2zf-C2H210.90.0014317339123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp+C k++++   L  H r+H
  Bostr.12659s0339.1.p 317 HECPICFKVYKSGQALGGHKRSH 339
                           79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-5634IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.13E-7731No hitNo description
PfamPF139129.0E-7929IPR007087Zinc finger, C2H2
SMARTSM003550.06931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM00355376282IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.13E-7312339No hitNo description
PfamPF139122.3E-10317340IPR007087Zinc finger, C2H2
SMARTSM003550.4317339IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621317340IPR007087Zinc finger, C2H2
PROSITE patternPS000280319339IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEEGKEKKFV CKFCYKTFPS GKSLGGHIRI HSNENSVDSD RYNGSKKKRL VDQREKQQQQ  60
QVCCRKCGFV SLKALSVHMA CHSEGEKMLM DSQSDTETSS APTRKRSKRV MRSNSESFSN  120
GSLSFASEID QEVWEAAYTL VMLSLSRDSS FKKRPNLVMN SLGESSDNNS VIVETKSSSG  180
EELKILNVKN QVLETDKVVD EDQLRSADDN GVILCDSNSS DSDYFMNGPK KSDSSDISVD  240
GSLRNTGFGS RFNNSLNRFK NSDERRSKYE LSKSKRVLFS YETDLCADKN SKIHRYRDNK  300
SPMVKKAGGD KKKSKGHECP ICFKVYKSGQ ALGGHKRSHS IGNQEEHNQV SEMRNQIDLN  360
VPASDIDELI RT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0339.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307570.11e-166zinc finger protein ZAT9
TrEMBLR0ISX21e-165R0ISX2_9BRAS; Uncharacterized protein
STRINGBostr.12659s0339.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19002162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26590.11e-151C2H2-like zinc finger protein