PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12659s0426.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 132aa    MW: 15226.2 Da    PI: 9.6313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12659s0426.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-0971116655
                           HHHHHHH.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   6 nerErrR.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           n  E++R R+ i+s++e L+e+ P++     +  + ++iL  A+eY+++Lq
  Bostr.12659s0426.1.p  71 NLLEKKRkRESIRSKLEALKEITPNC-----PQSDIIAILDSAIEYMRHLQ 116
                           788988889****************8.....57899**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.06466115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-970116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-971118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-771121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-671116No hitNo description
PfamPF000101.8E-671116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MNNDEEFLRL WLEKLNSLAN PEAHSNVRRI NSEGGEDNVR GKRPAESRRE GEKNRVKRQC  60
VSKSSDNSHD NLLEKKRKRE SIRSKLEALK EITPNCPQSD IIAILDSAIE YMRHLQLAAL  120
FIVLQEYVRN K*
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12659s0426.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010460396.16e-66PREDICTED: transcription factor MEE8-like isoform X1
SwissprotQ9FRI04e-40MEE8_ARATH; Transcription factor MEE8
TrEMBLR0ILF64e-52R0ILF6_9BRAS; Uncharacterized protein (Fragment)
STRINGBostr.12659s0426.1.p2e-90(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1706168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.12e-39bHLH family protein