PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.12722s0009.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 190aa    MW: 21914.2 Da    PI: 10.7637
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.12722s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.7e-141356347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           WT+ Ed++l ++v+  G+++Wk I ++m  gRt+ +c+ rw + 
  Bostr.12722s0009.1.p 13 LWTPSEDLKLTELVAASGPRNWKHIGEKMR-GRTGDSCRMRWINQ 56
                          6*****************************.***********885 PP
2Myb_DNA-binding39.51.3e-1265108348
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           ++  eEd + + a  +lG++ W++Ia+ ++ +Rt+  +k++w++++
  Bostr.12722s0009.1.p  65 AFNGEEDAIMLAAQSELGNK-WSRIAKLLP-RRTDIAVKNHWHQLK 108
                           6677****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.995657IPR017930Myb domain
SMARTSM007171.4E-121059IPR001005SANT/Myb domain
SuperFamilySSF466899.39E-2611109IPR009057Homeodomain-like
PfamPF002493.8E-131256IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-221364IPR009057Homeodomain-like
CDDcd001672.94E-101455No hitNo description
PROSITE profilePS5129421.4858112IPR017930Myb domain
SMARTSM007171.1E-1162110IPR001005SANT/Myb domain
PfamPF002491.0E-964108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-1865112IPR009057Homeodomain-like
CDDcd001673.20E-765108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MRRMHQERKE KKLWTPSEDL KLTELVAASG PRNWKHIGEK MRGRTGDSCR MRWINQLNPM  60
INKKAFNGEE DAIMLAAQSE LGNKWSRIAK LLPRRTDIAV KNHWHQLKKR ELTKQSKEET  120
TLTCLKETME YSARQHQFST IRADSLALST PHVSISQPSS SSLPSQAKHT MEARYFNTKI  180
PPKFIDFLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-271411210108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.12722s0009.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405602.24e-53LOW QUALITY PROTEIN: transcription factor MYB54
TrEMBLD7MJD81e-68D7MJD8_ARALL; Uncharacterized protein
STRINGBostr.12722s0009.1.p1e-139(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63001846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39700.13e-44myb domain protein 89